Data from: Resource base influences genome-wide DNA methylation levels in wild baboons (Papio cynocephalus)

Lea AJ, Altmann J, Alberts SC, Tung J

Date Published: October 28, 2015

DOI: http://dx.doi.org/10.5061/dryad.2d80m

 

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Title total_read_counts
Downloaded 10 times
Description Number of reads mapped to a given location in the genome for a given individual. Sites included in this dataset represent the set of filtered sites we analyzed to produce our main results.
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Title methylated_read_counts
Downloaded 13 times
Description Number of methylated reads mapped to a given location in the genome for a given individual. Sites included in this dataset represent the set of filtered sites we analyzed to produce our main results.
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Title Lea_et_al_MACAU_output
Downloaded 15 times
Description The beta (effect size), standard error, p-value, and FDR corrected value for each CpG site tested in our dataset. These are the results from a model, run in the program MACAU, testing for effects of resource base on DNA methylation levels while controlling for genetic relatedness, sex, age of the blood sample, age of the individual, and bisulfite conversion rate.
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Title counts_tables_columns
Downloaded 7 times
Description A file noting which individual appears in which column of the methylated and total read counts tables. The individual identifiers in this file are consistent with the identifiers in Table S2.
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Title cell_type_counts
Downloaded 3 times
Description Counts of Basophils, Eosinophils, Neutrophils, Lymphocytes, and Monocytes obtained from blood smears. Whether an individual was a member of the Lodge group is noted (where Y=yes, the individual was a member of this group; and N=no, the individual was a member of a wild-feeding group).
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When using this data, please cite the original publication:

Lea AJ, Altmann J, Alberts SC, Tung J (2016) Resource base influences genome-wide DNA methylation levels in wild baboons (Papio cynocephalus). Molecular Ecology 25(8): 1681–1696. http://dx.doi.org/10.1111/mec.13436

Additionally, please cite the Dryad data package:

Lea AJ, Altmann J, Alberts SC, Tung J (2015) Data from: Resource base influences genome-wide DNA methylation levels in wild baboons (Papio cynocephalus). Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.2d80m
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