Data from: Ancient DNA from the extinct South American giant glyptodont Doedicurus sp. (Xenarthra: Glyptodontidae) reveals that glyptodonts evolved from Eocene armadillos

Mitchell KJ, Scanferla A, Soibelzon E, Bonini R, Ochoa J, Cooper A

Date Published: May 9, 2016

DOI: http://dx.doi.org/10.5061/dryad.2dr33

 

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Title BEAST_files
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Description BEAST files, including input .xml and final maximum clade credibility tree.
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Title RAxML_files
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Description RAxML files, including input alignment & partition file and final tree.
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Title PartitionFinder_files
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Description Input & output from PartitionFinder analyses.
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Title MrBayes_files
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Description MrBayes files, including input .nex and final tree.
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Title PAUP_files
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Description PAUP* files, including input .nex and tree files.
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Title Doedicurus_sp._SeqData_Filtered_Collapsed.fastq
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Description FASTQ file containing filtered, de-mulitplexed, and collapsed MiSeq (Illumina) sequencing reads corresponding to the Doedicurus sp. enriched genomic library. See main publication for full details on data processing.
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Title Zaedyus_pichiy_SeqData_Filtered_Collapsed.fastq
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Description FASTQ file containing filtered, de-mulitplexed, and collapsed MiSeq (Illumina) sequencing reads corresponding to the Zaedyus pichiy enriched genomic library. See main publication for full details on data processing.
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Title Tolypeutes_matacus_SeqData_Filtered_Collapsed.fastq
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Description FASTQ file containing filtered, de-mulitplexed, and collapsed MiSeq (Illumina) sequencing reads corresponding to the Tolypeutes matacus enriched genomic library. See main publication for full details on data processing.
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Title Chaetophractus_villosus_SeqData_Filtered_Collapsed.fastq
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Description FASTQ file containing filtered, de-mulitplexed, and collapsed MiSeq (Illumina) sequencing reads corresponding to the Chaetophractus villosus enriched genomic library. See main publication for full details on data processing.
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Title NGS_pipeline_scripts
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Description Scripts for analysis of high-throughput sequencing data.
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When using this data, please cite the original publication:

Mitchell KJ, Scanferla A, Soibelzon E, Bonini R, Ochoa J, Cooper A (2016) Ancient DNA from the extinct South American giant glyptodont Doedicurus sp. (Xenarthra: Glyptodontidae) reveals that glyptodonts evolved from Eocene armadillos. Molecular Ecology 25(14): 3499-3508. http://dx.doi.org/10.1111/mec.13695

Additionally, please cite the Dryad data package:

Mitchell KJ, Scanferla A, Soibelzon E, Bonini R, Ochoa J, Cooper A (2016) Data from: Ancient DNA from the extinct South American giant glyptodont Doedicurus sp. (Xenarthra: Glyptodontidae) reveals that glyptodonts evolved from Eocene armadillos. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.2dr33
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