Data from: A parapatric propensity for breeding precludes the completion of speciation in common teal (Anas crecca, sensu lato)

 

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Title Anas crecca mtDNA control region sequences.fas
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Description FASTA file containing 144 mtDNA control region sequences (987 aligned sites) sampled from Common (Green-winged) Teal (Anas crecca). The first 58 sequences were sampled from Eurasia, and the next 86 sequences were sampled from North America.
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Title Anas crecca CHD1Z alleles.fas
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Description FASTA file containing 78 resolved alleles from intron 19 of the chromo-helicase DNA binding (CHD1Z) gene sampled from 50 Common (Green-winged) Teal (Anas crecca). The first 45 alleles were sampled from Eurasia, and the next 33 were sampled from North America. Note that CHD1Z is located on the Z-chromosome, and therefore, females only have a single copy.
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Title Anas crecca CRYAB alleles.fas
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Description FASTA file containing 78 resolved alleles from intron 1 of the alpha-B crystallin (CRYAB) gene sampled from 50 Common (Green-winged) Teal (Anas crecca). The first 50 alleles were sampled from Eurasia, and the next 50 were sampled from North America.
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Title Anas crecca ENO1 alleles.fas
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Description FASTA file containing 100 resolved alleles from intron 8 of the alpha enolase (ENO1) gene sampled from 50 Common (Green-winged) Teal (Anas crecca). The first 50 alleles were sampled from Eurasia, and the next 50 were sampled from North America.
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Title Anas crecca FGB alleles.fas
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Description FASTA file containing 100 resolved alleles from intron 7 of the beta fibrinogen (FGB) gene sampled from 50 Common (Green-winged) Teal (Anas crecca). The first 50 alleles were sampled from Eurasia, and the next 50 were sampled from North America.
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Title Anas crecca GRIN1 alleles.fas
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Description FASTA file containing 100 resolved alleles from intron 11 of the N-methyl D-aspartate 1 glutamate receptor (GRIN1) gene sampled from 50 Common (Green-winged) Teal (Anas crecca). The first 50 alleles were sampled from Eurasia, and the next 50 were sampled from North America.
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Title Anas crecca LDHB alleles.fas
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Description FASTA file containing 100 resolved alleles from intron 3 of the lactate dehydrogenase B(LDHB) gene sampled from 50 Common (Green-winged) Teal (Anas crecca). The first 50 alleles were sampled from Eurasia, and the next 50 were sampled from North America.
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Title Anas crecca ODC1 alleles.fas
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Description FASTA file containing 100 resolved alleles from intron 5 of the ornithine decarboxylase (ODC1) gene sampled from 50 Common (Green-winged) Teal (Anas crecca). The first 50 alleles were sampled from Eurasia, and the next 50 were sampled from North America.
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Title Anas crecca PCK1 alleles.fas
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Description FASTA file containing 100 resolved alleles from intron 8 of the phosphoenolpyruvate carboxykinase (PCK1) gene sampled from 50 Common (Green-winged) Teal (Anas crecca). The first 50 alleles were sampled from Eurasia, and the next 50 were sampled from North America.
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Title Anas crecca nuDNA for IM.infile
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Description Input file for analysis of population history in the program IM. The input contains 8 loci sampled from 50 individuals of Anas crecca (25 from Eurasia, population 1; 25 from North America, population 2). Note that the data have been filtered for recombination, and therefore, some loci have fewer than 100 alleles sampled. The command line for running IM was: -i infile -q1 25 -m1 20 -m2 20 -t 1 -b 500000 -l 12.0 -a 50 -fg -g1 0.9 -g2 0.85 -k 30 -n 30 -q2 25 -qA 5 -s 105976 -p13 -j1 -e 24.0 -o outfile.txt
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Title Anas crecca mtDNA for IM.infile
Downloaded 19 times
Description Input file for analysis of population history from mtDNA control region (986 aligned nucleotides) in the program IM. The input contains 144 individuals of Anas crecca (58 from Eurasia, population 1; 86 from North America, population 2). The command line for running IM was: -i infile -q1 200 -m1 0.2 -m2 0.2 -t 40 -b 500000 -l 12.0 -fg -g1 0.9 -g2 0.9 -k 10 -n 10 -q2 200 -qA 40 -s 3156714860 -p13 -j1 -e 24.0 -o outfile.txt
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Title Anas crecca LAMARC.menu
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Description Menu file for performing LAMARC analyses using the 8 nuclear introns sampled from Eurasian Common Teal.
Download TEALow-8loci.menu (223.8 Kb)
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Title Anas crecca Structure infile.txt
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Description File containing genotypic information for 8 nuclear loci sampled from 25 Anas crecca crecca and 25 Anas crecca carolinensis. This file is formatted for STRUCTURE analyses.
Download Teal_8loci.txt (2.885 Kb)
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Title Anas crecca CRYAB.arp
Downloaded 22 times
Description Resolved alleles for Anas crecca crecca (n = 50)and Anas crecca carolinensis (n = 50) for intron 1 of the CRYAB gene. This file is formatted for analyses in Arlequin and sequences are sorted between OW (A. c. crecca) and NW (A. c. carolinensis) samples.
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Title TEAL-CHD1Z
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Description Resolved alleles for Anas crecca crecca (n = 42)and Anas crecca carolinensis (n = 36) for intron 19 of the CHD1Z gene. This file is formatted for analyses in Arlequin and sequences are sorted between OW (A. c. crecca) and NW (A. c. carolinensis) samples.
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Title Anas crecca ENO1.arp
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Description Resolved alleles for Anas crecca crecca (n = 50)and Anas crecca carolinensis (n = 50) for intron 8 of the ENO1 gene. This file is formatted for analyses in Arlequin, and sequences are sorted between OW (A. c. crecca) and NW (A. c. carolinensis) samples.
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Title Anas crecca FGB.arp
Downloaded 18 times
Description Resolved alleles for Anas crecca crecca (n = 50)and Anas crecca carolinensis (n = 50) for intron 7 of the FGB gene. This file is formatted for analyses in Arlequin, and sequences are sorted between OW (A. c. crecca) and NW (A. c. carolinensis) samples.
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Title Anas crecca GRIN1.arp
Downloaded 19 times
Description Resolved alleles for Anas crecca crecca (n = 50)and Anas crecca carolinensis (n = 50) for intron 13 of the GRIN1 gene. This file is formatted for analyses in Arlequin, and sequences are sorted between OW (A. c. crecca) and NW (A. c. carolinensis) samples.
Download TEAL-MDAR.arp (34.90 Kb)
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Title Anas crecca LDHB.arp
Downloaded 21 times
Description Resolved alleles for Anas crecca crecca (n = 50)and Anas crecca carolinensis (n = 50) for intron 3 of the LDHB gene. This file is formatted for analyses in Arlequin, and sequences are sorted between OW (A. c. crecca) and NW (A. c. carolinensis) samples.
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Title Anas crecca ODC1.arp
Downloaded 21 times
Description Resolved alleles for Anas crecca crecca (n = 50)and Anas crecca carolinensis (n = 50) for intron 5 of the ODC1 gene. This file is formatted for analyses in Arlequin, and sequences are sorted between OW (A. c. crecca) and NW (A. c. carolinensis) samples.
Download TEAL-ODC.arp (36.80 Kb)
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Title Anas crecca PCK1.arp
Downloaded 18 times
Description Resolved alleles for Anas crecca crecca (n = 50)and Anas crecca carolinensis (n = 50) for intron 8 of the PCK1 gene. This file is formatted for analyses in Arlequin, and sequences are sorted between OW (A. c. crecca) and NW (A. c. carolinensis) samples.
Download TEAL-PCK.arp (36.10 Kb)
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Title Genbank accession numbers.docx
Downloaded 36 times
Description Table of genbank accession numbers for each sample used in this study. Sampling location is provided (Old World, OW, for Eurasian Anas crecca crecca; New World, NW, for North American Anas crecca carolinensis). NA = not applicable (nuclear loci were not sequenced for 94 individuals).
Download genbank accession numbers.docx (32.26 Kb)
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When using this data, please cite the original publication:

Peters J, McCracken K, Pruett C, Rohwer S, Drovetski S, Zhuravlev Y, Kulikova I, Gibson D, Winker K (2012) A parapatric propensity for breeding precludes the completion of speciation in common teal (Anas crecca, sensu lato). Molecular Ecology 21(18): 4563–4577. http://dx.doi.org/10.1111/j.1365-294X.2012.05711.x

Additionally, please cite the Dryad data package:

Peters JL, McCracken KG, Pruett CL, Rohwer S, Drovetski SV, Zhuravlev YN, Kulikova I, Gibson DD, Winker K (2012) Data from: A parapatric propensity for breeding precludes the completion of speciation in common teal (Anas crecca, sensu lato). Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.2f1k3
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