Data from: Phylogenomic analysis of carangimorph fishes reveals flatfish asymmetry arose in a blink of the evolutionary eye

Harrington RC, Faircloth BC, Eytan RI, Smith WL, Near TJ, Alfaro ME, Friedman M

Date Published: October 3, 2016

DOI: http://dx.doi.org/10.5061/dryad.2fj55

 

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Title flatfish_timetree_BMCeb
Downloaded 9 times
Description Fossil calibrated time-tree from BEAST dating analyses.
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Title UCE alignments, 100% complete for 55 taxa
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Description UCE alignment files for 100% complete alignments (i.e. 97 UCE loci with each alignment containing all 55 taxa). Apologies for typos in some taxa names.
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Title UCE alignments containing minimum of 52 taxa
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Description UCE alignment files for 95% complete alignments (these alignments contain at least 52 of the 55 taxa from our analyses). Total of 596 UCE loci alignments. Apologies for typos in some taxa names.
Download sate-gblocks-clean-min-52-taxa.tar (14.06 Mb)
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Title UCE alignments, containing minimum of 41 taxa
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Description UCE alignments containing a minimum of 41 of our 55 sampled taxa. Total of 1014 UCE loci alignments. Apologies for typos in a few taxa names.
Download sate-gblocks-clean-min-41-taxa.tar (21.70 Mb)
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Title Carangimorpha exabayes phylogeny, 95% complete
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Description Exabayes phylogeny from partitioned analysis of 596 concatenated UCE loci (corresponding to our 95% complete matrix, with 52 of 55 taxa present in each UCE locus).
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Title Carangimorpha exabayes phylogeny, 75% complete matrix
Downloaded 4 times
Description Exabayes phylogeny from partitioned analysis of 1014 concatenated UCE loci (corresponding to our 75% complete matrix, with 41 of 55 taxa present in each UCE locus).
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Title Carangimorpha exabayes phylogeny, 100% complete matrix
Downloaded 3 times
Description Exabayes phylogeny based on partitioned, concatenated analysis of 97 UCE loci (corresponding to our 100% complete matrix, with sequences of 55 of 55 taxa present for each locus).
Download 100p_complete_exabayes.tree (3.846 Kb)
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When using this data, please cite the original publication:

Harrington RC, Faircloth BC, Eytan RI, Smith WL, Near TJ, Alfaro ME, Friedman M (2016) Phylogenomic analysis of carangimorph fishes reveals flatfish asymmetry arose in a blink of the evolutionary eye. BMC Evolutionary Biology 16: 224. http://dx.doi.org/10.1186/s12862-016-0786-x

Additionally, please cite the Dryad data package:

Harrington RC, Faircloth BC, Eytan RI, Smith WL, Near TJ, Alfaro ME, Friedman M (2016) Data from: Phylogenomic analysis of carangimorph fishes reveals flatfish asymmetry arose in a blink of the evolutionary eye. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.2fj55
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