Data from: Relative accuracy of three common methods of parentage analysis in natural populations

Harrison HB, Saenz-Agudelo P, Planes S, Berumen ML, Jones GP

Date Published: October 24, 2012

DOI: http://dx.doi.org/10.5061/dryad.2ht96

 

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Title N500_adults_20percent
Downloaded 39 times
Description Simulated data - N500 low diversity population with 20% of adults sampled and 20 microsatellite loci. The first 10 and 15 loci were subset for analyses with 10 and 15 loci.
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Title N500_adults_40percent
Downloaded 23 times
Description Simulated data - N500 low diversity population with 40% of adults sampled and 20 microsatellite loci. The first 10 and 15 loci were subset for analyses with 10 and 15 loci.
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Title N500_adults_60percent
Downloaded 24 times
Description Simulated data - N500 low diversity population with 60% of adults sampled and 20 microsatellite loci. The first 10 and 15 loci were subset for analyses with 10 and 15 loci.
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Title N500_adults_80percent
Downloaded 23 times
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Title N500_adults_100percent
Downloaded 22 times
Description Simulated data - N500 low diversity population with 100% of adults sampled and 20 microsatellite loci. The first 10 and 15 loci were subset for analyses with 10 and 15 loci.
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Title N1000_adults_20percent
Downloaded 27 times
Description Simulated data - N1000 high diversity population with 20% of adults sampled and 20 microsatellite loci. The first 10 and 15 loci were subset for analyses with 10 and 15 loci.
Download N1000_adults_20percent.txt (22.29 Kb)
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Title N1000_adults_40percent
Downloaded 23 times
Description Simulated data - N1000 high diversity population with 40% of adults sampled and 20 microsatellite loci. The first 10 and 15 loci were subset for analyses with 10 and 15 loci.
Download N1000_adults_40percent.txt (44.36 Kb)
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Title N1000_adults_60percent
Downloaded 20 times
Description Simulated data - N1000 high diversity population with 60% of adults sampled and 20 microsatellite loci. The first 10 and 15 loci were subset for analyses with 10 and 15 loci.
Download N1000_adults_60percent.txt (66.39 Kb)
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Title N1000_adults_80percent
Downloaded 26 times
Description Simulated data - N1000 high diversity population with 80% of adults sampled and 20 microsatellite loci. The first 10 and 15 loci were subset for analyses with 10 and 15 loci.
Download N1000_adults_80percent.txt (88.45 Kb)
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Title N1000_adults_100percent
Downloaded 20 times
Description Simulated data - N1000 high diversity population with 20% of adults sampled and 20 microsatellite loci. The first 10 and 15 loci were subset for analyses with 10 and 15 loci.
Download N1000_adults_100percent.txt (110.4 Kb)
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Title N500_juveniles_0.1percenterror
Downloaded 20 times
Description Simulated data - N500 low diversity offspring with 0.1% genotyping error rates. The first 10 and 15 loci were subset for analyses with 10 and 15 loci.
Download N500_juveniles_0.1percenterror.txt (116.1 Kb)
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Title N500_juveniles_1.0percenterror
Downloaded 25 times
Description Simulated data - N500 low diversity offspring with 1.0% genotyping error rates. The first 10 and 15 loci were subset for analyses with 10 and 15 loci.
Download N500_juveniles_1.0percenterror.txt (116.2 Kb)
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Title N1000_juveniles_0.1percenterror
Downloaded 21 times
Description Simulated data - N1000 high diversity offspring with 0.1% genotyping error rates. The first 10 and 15 loci were subset for analyses with 10 and 15 loci.
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Title N1000_juveniles_1.0percenterror
Downloaded 19 times
Description Simulated data - N1000 high diversity offspring with 1.0% genotyping error rates. The first 10 and 15 loci were subset for analyses with 10 and 15 loci.
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Title Methods results
Downloaded 42 times
Description Results of parentage analyses using simulated data - Results from COLONY, FaMoz and an exclusion-Bayes' theorem approach by Christie et al. (Mol. Ecol. Res. 2010, 10, 115-128) to resolve true parent-offspring pairs under 60 simulated scenarios that incrementally simulate the number of loci, allelic diversity , adult sample size and genotyping error.
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Title Supp.Mat. R-Scripts
Downloaded 38 times
Description Supplementary R-script for processing software outputs of COLONY, FaMoz and an exclusion-Bayes theorem approach by Christie et al. (Mol. Ecol. Res. 2010, 10, 115-128). Script also includes details of the Generalized Linear Model to assess the relative variance attributed to different factor affecting the accuracy of assignments.
Download Supp.Mat. R-Scripts.R (10.78 Kb)
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When using this data, please cite the original publication:

Harrison HB, Saenz-Agudelo P, Planes S, Berumen ML, Jones GP (2012) Relative accuracy of three common methods of parentage analysis in natural populations. Molecular Ecology 22(4): 1158-1170. http://dx.doi.org/10.1111/mec.12138

Additionally, please cite the Dryad data package:

Harrison HB, Saenz-Agudelo P, Planes S, Berumen ML, Jones GP (2012) Data from: Relative accuracy of three common methods of parentage analysis in natural populations. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.2ht96
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