Data from: Demographic model selection using random forests and the site frequency spectrum

Smith ML, Ruffley M, Espindola A, Tank DC, Sullivan J, Carstens BC

Date Published: July 21, 2017

DOI: http://dx.doi.org/10.5061/dryad.2j27b

 

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Title Barcodes_Grp2_Mar2016_MEC-17-0128
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Description Barcodes associated with Grp2_i03_Mar2016.fastq.gz.
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Title Barcodes_Grp1_Mar2016_MEC-17-0128
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Title Barcodes_Grp3_Mar2016_MEC-17-0128
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Title Barcodes_Grp4_Mar2016_MEC-17-0128
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Description Barcodes associated with Grp4_i05_Mar2016.fastq.gz.
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Title Barcodes_Grp5_Mar2016_MEC-17-0128
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Title Barcodes_Grp1_Nov2015_MEC-17-0128
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Title i4_barcodes_July2016_MEC-17-0128
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Title i5_barcodes_July2016_MEC-17-0128
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Title i6_barcodes_July2016_MEC-17-0128
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Title i7_barcodes_July2016_MEC-17-0128
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Title i8_barcodes_July2016_MEC-17-0128
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Title i12_barcodes_July2016_MEC-17-0128
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Title i3_barcodes_July2016_MEC-17-0128
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Title i2_barcodes_July2016_MEC-17-0128
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Description Barcodes associated with ZBCi2-V1T-1_S43_L006_R1_001.fastq.gz.
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Title i1_barcodes_July2016_MEC-17-0128
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Description Barcodes associated with ZBCi1-V1T-1_S42_L006_R1_001.fastq.gz.
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Title ZBCi8-V1T-1_S49_L006_R1_001.fastq
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Title ZBCi2-V1T-1_S43_L006_R1_001.fastq
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Title ZBCi1-V1T-1_S42_L006_R1_001.fastq
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Title ZBCi3-V1T-1_S44_L006_R1_001.fastq
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Title ZBCi4-V1T-1_S45_L006_R1_001.fastq
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Title ZBCi5-V1T-1_S46_L006_R1_001.fastq
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Title ZBCi6-V1T-1_S47_L006_R1_001.fastq
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Title ZBCi7-V1T-1_S48_L006_R1_001.fastq
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Title Grp1_i06_Nov2015.fastq
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Title Grp2_i03_Mar2016.fastq
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Title Grp1_i12_Mar2016.fastq
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Title Grp5_i06_Mar2016.fastq
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Title Grp3_i04_Mar2016.fastq
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Title Grp4_i05_Mar2016.fastq
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Title ZBCi12-V1T-1_S50_L006_R1_001.fastq
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Title params_ex
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Description Example of a params file used in pyramid for this study.
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Title Haplo_July2016_77Samples_p60.unlinked_snps
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Description pyRAD output: unlinked snps
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Title Haplo_July2016_77Samples_p60.snps
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Description pyRAD output: SNPs
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Title Haplo_July2016_77Samples_p60.alleles
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Description pyRAD output: alleles
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Title Haplo_July2016_77Samples_p60.loci
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Description pyRAD output: loci
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When using this data, please cite the original publication:

Smith ML, Ruffley M, Espíndola A, Tank DC, Sullivan J, Carstens BC (2017) Demographic Model Selection using Random Forests and the Site Frequency Spectrum. Molecular Ecology, online in advance of print. http://dx.doi.org/10.1111/mec.14223

Additionally, please cite the Dryad data package:

Smith ML, Ruffley M, Espindola A, Tank DC, Sullivan J, Carstens BC (2017) Data from: Demographic model selection using random forests and the site frequency spectrum. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.2j27b
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