Data from: Demographic modelling with whole-genome data reveals parallel origin of similar Pundamilia cichlid species after hybridization

Meier JI, Sousa VC, Marques DA, Selz OM, Wagner CE, Excoffier L, Seehausen O

Date Published: September 8, 2016

DOI: http://dx.doi.org/10.5061/dryad.2jd45

 

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Title fastsimcoal2 template file for the best model
Downloaded 23 times
Description Template file for fastsimcoal2 describing the model of "speciation from a hybrid population at Python Island". This is the model with the highest likelihood among all models tested.
Download pythonHybrid_sympatricSpeciation.tpl (1.594 Kb)
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Title fastsimcoal2 estimation file for the best model
Downloaded 20 times
Description Fastsimcoal2 input file describing the parameter distributions for the model of "speciation from a hybrid population at Python Island". This is the model with the highest likelihood among all models tested.
Download pythonHybrid_sympatricSpeciation.est (1.38 Kb)
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Title observed four-dimensional SFS
Downloaded 11 times
Description Observed four-dimensional SFS of four whole-genome sequenced individuals each from P. pundamilia and P. nyererei at Makobe Island and from P. sp. "pundamilia-like" and P. sp. "nyererei-like" at Python Island.
Download pythonHybrid_sympatricSpeciation_MSFS.obs (15.86 Kb)
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Title Maximum likelihood parameters of the best model
Downloaded 10 times
Description File with model specification and maximum likelihood parameters of the model with highest likelihood among all models tested ("speciation from a hybrid population at Python Island").
Download pythonHybrid_sympatricSpeciation_maxL.par (1.77 Kb)
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When using this data, please cite the original publication:

Meier JI, Sousa VC, Marques DA, Selz OM, Wagner CE, Excoffier L, Seehausen O (2017) Demographic modelling with whole-genome data reveals parallel origin of similar Pundamilia cichlid species after hybridization. Molecular Ecology 26(1): 123-141. http://dx.doi.org/10.1111/mec.13838

Additionally, please cite the Dryad data package:

Meier JI, Sousa VC, Marques DA, Selz OM, Wagner CE, Excoffier L, Seehausen O (2016) Data from: Demographic modelling with whole-genome data reveals parallel origin of similar Pundamilia cichlid species after hybridization. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.2jd45
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