Data from: Adaptive divergence despite strong genetic drift: genomic analysis of the evolutionary mechanisms causing genetic differentiation in the island fox (Urocyon littoralis)

Funk WC, Lovich RE, Hohenlohe PA, Hofman CA, Morrison SA, Sillett TS, Ghalambor CK, Maldonado JE, Rick TC, Day MD, Polato NR, Fizpatrick SW, Coonan TJ, Crooks KR, Dillon A, Garcelon DK, King JL, Boser CL, Gould N, Andelt WF

Date Published: October 24, 2016

DOI: http://dx.doi.org/10.5061/dryad.2kn1v

 

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Title README.txt
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Description Metadata describing the contents of all data files.
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Title grays.tar.gz
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Description Raw RAD sequencing data in fastq format for mainland gray foxes.
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Title smi.tar.gz
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Description Raw RAD sequencing data in fastq format for San Miguel Island foxes.
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Title sri.tar.gz
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Description Raw RAD sequencing data in fastq format for Santa Rosa Island foxes.
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Title sci.tar.gz
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Description Raw RAD sequencing data in fastq format for Santa Cruz Island foxes.
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Title sca.tar.gz
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Description Raw RAD sequencing data in fastq format for Santa Catalina Island foxes.
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Title scl.tar.gz
Downloaded 17 times
Description Raw RAD sequencing data in fastq format for San Clemente Island foxes.
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Title sni.tar.gz
Downloaded 11 times
Description Raw RAD sequencing data in fastq format for San Nicolas Island foxes.
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Title final_contigs.fa
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Description fasta file of RAD contigs
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Title GP_with_grays.txt
Downloaded 41 times
Description SNP genotypes for mainland gray foxes and all island fox populations in Genepop input file format.
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Title GP_NO_grays.txt
Downloaded 32 times
Description SNP genotypes for all island fox populations (gray foxes NOT included) in Genepop input file format.
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When using this data, please cite the original publication:

Funk WC, Lovich RE, Hohenlohe PA, Hofman CA, Morrison SA, Sillett TS, Ghalambor CK, Maldonado JE, Rick TC, Day MD, Polato NR, Fitzpatrick SW, Coonan TJ, Crooks KR, Dillon A, Garcelon DK, King JL, Boser CL, Gould N, Andelt WF (2016) Adaptive divergence despite strong genetic drift: genomic analysis of the evolutionary mechanisms causing genetic differentiation in the island fox (Urocyon littoralis). Molecular Ecology 25(10): 2176-2194. http://dx.doi.org/10.1111/mec.13605

Additionally, please cite the Dryad data package:

Funk WC, Lovich RE, Hohenlohe PA, Hofman CA, Morrison SA, Sillett TS, Ghalambor CK, Maldonado JE, Rick TC, Day MD, Polato NR, Fizpatrick SW, Coonan TJ, Crooks KR, Dillon A, Garcelon DK, King JL, Boser CL, Gould N, Andelt WF (2016) Data from: Adaptive divergence despite strong genetic drift: genomic analysis of the evolutionary mechanisms causing genetic differentiation in the island fox (Urocyon littoralis). Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.2kn1v
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