Data from: Activation of the Arabidopsis thaliana immune system by combinations of common ACD6 alleles

Todesco M, Kim S, Chae E, Bomblies K, Zaidem M, Smith LM, Weigel D, Laitinen RAE

Date Published: July 11, 2014

DOI: http://dx.doi.org/10.5061/dryad.2nk64

 

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Title RADseq data and ACD6 genotype for Costa Brava accessions
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Description Genotypic information obtained by RADseq for 1688 accessions collected in the Costa Brava region of Spain in Spring 2012. Reads were processed with SHORE (ver. 0.9) and mapped to the reference sequence, Col-0, with BWA, using the default parameters and allowing 5% mismatches. All mapped reads were converted into BAM format by Samtools (ver. 0.1.18) for further analysis. Single nucleotide polymorphism (SNP) genotypes were generated using the subprogram UnifiedGenotyper implemented in GATK (ver. 2.3-6). The genotype at the ACD6 locus is reported for each individual as well, as determined by direct Sanger sequencing of the transmembrane domain of ACD6.
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When using this data, please cite the original publication:

Todesco M, Kim S, Chae E, Bomblies K, Zaidem M, Smith LM, Weigel D, Laitinen RAE (2014) Activation of the Arabidopsis thaliana immune system by combinations of common ACD6 alleles. PLoS Genetics 10(7): e1004459. http://dx.doi.org/10.1371/journal.pgen.1004459

Additionally, please cite the Dryad data package:

Todesco M, Kim S, Chae E, Bomblies K, Zaidem M, Smith LM, Weigel D, Laitinen RAE (2014) Data from: Activation of the Arabidopsis thaliana immune system by combinations of common ACD6 alleles. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.2nk64
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