Data from: Trunk dental tissue evolved independently from underlying dermal bony plates but is associated to surface bones in living odontode-bearing catfish

Rivera-Rivera CJ, Montoya-Burgos JI

Date Published: September 15, 2017

DOI: https://doi.org/10.5061/dryad.2p6b5

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Title Raw sequences
Description All the markers which were newly sequenced for this study.
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Title Gene_Alignments
Downloaded 3 times
Description The sequence data used in our analyses, already aligned with areas of ambiguous alignment removed, and separated by gene.
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Title DS1-DS4_alignments
Downloaded 3 times
Description Concatenated alignment of our data, from DS1 to DS4. DS1 is all the concatenated data in nucleotides, in DS2, all the coding genes have been translated to amino acids, in DS3, the nucleotide sites in the non-coding genes belonging to the fastest gamma rate category have been removed, and in DS4 the nucleotide sites in the non-coding genes belonging to the *two* fastest gamma rate categories have been removed.
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Title Trees
Downloaded 1 time
Description All the trees obtained in this study, with the sequence data that can be found in this submission: A Maximum-Likelihood tree with 1000 bootstraps for each of the four datasets (DS1-DS4), and a Bayesian Inference consensus tree after 20M generations, also for each of the four datasets. Finally, we also include the final time tree obtained with the DS4 dataset, with the time calibration points mentioned in the publications, and after 30M generations, using BEAST v1.8.4. This last file has all the parameter information in the nodes, and has to be visualized with a program like figtree.
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Title Sequence ID table
Downloaded 3 times
Description This table was also included as Supplementary Data in the publication, and shows the GenBank accession numbers for all of the sequences used in this study which came from that service.
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When using this data, please cite the original publication:

Rivera-Rivera CJ, Montoya-Burgos JI (2017) Trunk dental tissue evolved independently from underlying dermal bony plates but is associated with surface bones in living odontode-bearing catfish. Proceedings of the Royal Society B 284(1865): 20171831. https://doi.org/10.1098/rspb.2017.1831

Additionally, please cite the Dryad data package:

Rivera-Rivera CJ, Montoya-Burgos JI (2017) Data from: Trunk dental tissue evolved independently from underlying dermal bony plates but is associated to surface bones in living odontode-bearing catfish. Dryad Digital Repository. https://doi.org/10.5061/dryad.2p6b5
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