Data from: Novel distances for Dollo data

Woodhams M, Steane DA, Jones RC, Nicolle D, Moulton V, Holland BR

Date Published: September 14, 2012

DOI: http://dx.doi.org/10.5061/dryad.2qt77

 

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Title padd_Dollo_template
Downloaded 25 times
Description An example input file for use with the perl script for calculating ADD and PADD distances.
Download padd_Dollo_template.nex (611 bytes)
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Title Online Supplementary Material
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Description Contains instructions on how to use the Perl script for computing ADD and PADD distances. It also contains additional results in the form of 10 supplementary tables and 8 supplementary figures.
Download OnlineSupplementaryMaterial.pdf (325.5 Kb)
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Title perl script for calculating ADD and PADD
Downloaded 32 times
Description See the online supplementary material for instructions on use of this script.
Download add_Dollo_dist.pl (8.483 Kb)
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Title Provenance information for Adnataria
Downloaded 73 times
Download Provenance information for Adnataria.pdf (77.70 Kb)
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Title Adnataria case study
Downloaded 27 times
Description This nexus file contains both the data matrix and the resulting trees for the Adnataria case study.
Download Adnataria_casestudy.nex (347.6 Kb)
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Title Eucalyptus case study
Downloaded 108 times
Description This nexus file contains the data matrix and resulting tree for the Eucalyptus case study.
Download Eucalyptus_casestudy.nex (814.4 Kb)
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Title Gene presence/absence case study
Downloaded 28 times
Description This nexus file contains the data matrix and resulting tree for the gene presence/absence case study based on the COG database.
Download Cogs_casestudy.nex (205.8 Kb)
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When using this data, please cite the original publication:

Woodhams M, Steane DA, Jones RC, Nicolle D, Moulton V, Holland BR (2012) Novel distances for Dollo data. Systematic Biology 62(1): 62-77. http://dx.doi.org/10.1093/sysbio/sys071

Additionally, please cite the Dryad data package:

Woodhams M, Steane DA, Jones RC, Nicolle D, Moulton V, Holland BR (2012) Data from: Novel distances for Dollo data. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.2qt77
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