Data from: The effects of inference method, population sampling and gene sampling on species tree inferences: an empirical study in slender salamanders (Plethodontidae: Batrachoseps)

Jockusch EL, Martínez-Solano I, Timpe EK

Date Published: September 18, 2014

DOI: http://dx.doi.org/10.5061/dryad.2sc4n

 

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Title Jockuschetal_SupplementalFigures_S1-S7
Downloaded 26 times
Description pdf file of gene trees for 6 genes (Supplemental Figures S1-S6) and species trees (Supplemental Figure S7) for analyses examining leverage of mitochondrial DNA
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Title Jockuschetal_Supplemental TableS1
Downloaded 6 times
Description sample inclusion for replicated subsamples
Download Jockuschetal_SuppTableS1_Final.xls (83.96 Kb)
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Title Jockuschetal_89Individual_6Gene_StrictClock_StarBEAST
Downloaded 15 times
Description xml file for 89-individuals, 6 genes that produced tree Figure 2a.
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Title Jockuschetal_SpeciesTrees_Fig2
Downloaded 10 times
Description Tree file, in nexus format, of trees shown in Figure 2. (File contains multiple tree and taxa blocks.)
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Title MPEST_BootstrapScripts
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Description This zipped file unpacks into a folder with R and shell scripts for running MP-EST bootstrap analyses
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Download README.txt (1.346 Kb)
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Title Jockuschetal_GeneAlignments_nexusFiles
Downloaded 8 times
Description This zip file contains 6 nexus files, one for each gene
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Title Jockuschetal_SuppFigS1-S6Trees_nexusFormat
Downloaded 6 times
Description This zip files includes nexus-formatted gene trees shown in Supplemental Figures S1-S6.
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Title Jockuschetal_BatrachosepsSpeciesTrees_Primers_SuppTable2
Downloaded 48 times
Description Primers used for amplification and sequencing of nuclear genes
Download Jockuschetal_BatrachosepsSpeciesTrees_Pri...e2.pdf (92.09 Kb)
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When using this data, please cite the original publication:

Jockusch EL, Martínez-Solano I, Timpe EK (2015) The effects of inference method, population sampling and gene sampling on species tree inferences: an empirical study in slender salamanders (Plethodontidae: Batrachoseps). Systematic Biology 64(1): 66-83. http://dx.doi.org/10.1093/sysbio/syu078

Additionally, please cite the Dryad data package:

Jockusch EL, Martínez-Solano I, Timpe EK (2014) Data from: The effects of inference method, population sampling and gene sampling on species tree inferences: an empirical study in slender salamanders (Plethodontidae: Batrachoseps). Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.2sc4n
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