Data from: Landscape features along migratory routes influence adaptive genomic variation in anadromous steelhead (Oncorhynchus mykiss)

Micheletti S, Matala A, Matala A, Narum S

Date Published: November 9, 2017

DOI: https://doi.org/10.5061/dryad.2tm29.2

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Title All landscape variable values
Downloaded 4 times
Description Measurements for all landscape variables both at natal site and along migration paths for every collection locality.
Download all_env_Values.xlsx (67.83 Kb)
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Title Full RAD Loci Stats
Downloaded 4 times
Description Large table including stats for each RAD locus globally and by population. The RAD sequence, mapping position to the O. mykiss assembly, and outlier classification are included for each locus. Additionally, the genotype success rate, observed heterozygosity, expected heterozygosity, minor allele frequency, and HWE corrected P.val (FDR) are included globally and for each population.
Download full_loci_table.xlsx (56.97 Mb)
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Title Top BLAST hits
Downloaded 2 times
Description Top BLAST hits for loci identified by the majority of outlier tests (3/4) and GEA analyses (2/3). For each SNP, the environmental association and category (if applicable) are included. Additionally, the top BLAST hit and nearest gene (within 10 kb) are included with their GO terms.
Download Blast_table_V2.xlsx (54.44 Kb)
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Title Individual Read Statistics
Downloaded 2 times
Description Read statistics for each individual after process_radtags was performed.
Download dry_ind_read_stats.xlsx (173.7 Kb)
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Title Pairwise FST Table
Downloaded 2 times
Description Pairwise population FST calculated by hierfstat. FST values are represented between each cluster (k=3), globally between populations, and between populations within each genetic cluster.
Download FST_tables.xlsx (70.28 Kb)
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When using this data, please cite the original publication:

Micheletti SJ, Matala AR, Matala AP, Narum SR (2017) Landscape features along migratory routes influence adaptive genomic variation in anadromous steelhead (Oncorhynchus mykiss). Molecular Ecology, online in advance of print. https://doi.org/10.1111/mec.14407

Additionally, please cite the Dryad data package:

Micheletti S, Matala A, Matala A, Narum S (2017) Data from: Landscape features along migratory routes influence adaptive genomic variation in anadromous steelhead (Oncorhynchus mykiss). Dryad Digital Repository. https://doi.org/10.5061/dryad.2tm29.2
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