Data from: Optimisation of next generation sequencing transcriptome annotation for species lacking sequenced genomes

Ockendon NF, O'Connell LA, Bush SJ, Monzon-Sandoval J, Barnes H, Székely T, Hofmann HA, Dorus S, Urrutia AO

Date Published: September 30, 2015

DOI: http://dx.doi.org/10.5061/dryad.2v3h4

 

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Title Dmel_denovo_assembly_VelvetOases.fa
Downloaded 7 times
Description D. melanogaster de novo assembly constructed using Velvet Oases
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Title Dros_denovo_assembly_Trinity.fa
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Description D. melanogaster de novo assembly constructed using Trinity
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Title Drosophila guided assemblies
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Description Guided assemblies constructed from D. melanogaster RNA-seq reads guided by the genomes of each of the other 11 drosophila species, constructed using Velvet Columbus
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Title human-RNAseq_mapto_Gorilla-gorilla
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Description Human RNA-seq reads aligned to the G. gorilla genome
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Title human-RNAseq_mapto_Pan-troglodytes
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Description Human RNA-seq reads aligned to the P. troglodytes genome
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Title human-RNAseq_mapto_Pongo-abelii
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Description Human RNA-seq reads aligned to the P. abelii genome
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Title human-RNAseq_mapto_Macaca-mulatta
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Description Human RNA-seq reads aligned to the M. mulatta genome
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Title human-RNAseq_mapto_total-human
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Description Human RNA-seq reads aligned to the human genome
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Title dmel_RNA-seq_mapto_dana_sam
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Description D. melanogaster RNA-seq reads aligned to the D. ananassae genome
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Title dmel_RNA-seq_mapto_dere_sam
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Description D. melanogaster RNA-seq reads aligned to the D. erecta genome
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Title dmel_RNA-seq_mapto_dgri_sam
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Description D. melanogaster RNA-seq reads aligned to the D. grimshawi genome
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Title dmel_RNA-seq_mapto_dmel_sam
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Description D. melanogaster RNA-seq reads aligned to the D. melanogaster genome
Download dmel_RNA-seq_mapto_dmel_sam.out.gz (384.0 Mb)
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Title dmel_RNA-seq_mapto_dmoj_sam
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Description D. melanogaster RNA-seq reads aligned to the D. mojavensis genome
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Title dmel_RNA-seq_mapto_dper_sam
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Description D. melanogaster RNA-seq reads aligned to the D. persimilis genome
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Title dmel_RNA-seq_mapto_dpse_sam
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Description D. melanogaster RNA-seq reads aligned to the D. pseudoobscura genome
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Title dmel_RNA-seq_mapto_dsec_sam
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Description D. melanogaster RNA-seq reads aligned to the D. sechellia genome
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Title dmel_RNA-seq_mapto_dsim_sam
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Description D. melanogaster RNA-seq reads aligned to the D. simulans genome
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Title dmel_RNA-seq_mapto_dvir_sam
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Description D. melanogaster RNA-seq reads aligned to the D. virilis genome
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Title dmel_RNA-seq_mapto_dwil_sam
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Description D. melanogaster RNA-seq reads aligned to the D. willistoni genome
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Title dmel_RNA-seq_mapto_dyak_sam
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Description D. melanogaster RNA-seq reads aligned to the D. yakuba genome
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Title Figure_data_files
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Description Data text files for all figures. README.txt contains details of content.
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When using this data, please cite the original publication:

Ockendon NF, O'Connell LA, Bush SJ, Monzon-Sandoval J, Barnes H, Székely T, Hofmann HA, Dorus S, Urrutia AO (2015) Optimisation of next generation sequencing transcriptome annotation for species lacking sequenced genomes. Molecular Ecology Resources 16(2): 446-458. http://dx.doi.org/10.1111/1755-0998.12465

Additionally, please cite the Dryad data package:

Ockendon NF, O'Connell LA, Bush SJ, Monzon-Sandoval J, Barnes H, Székely T, Hofmann HA, Dorus S, Urrutia AO (2015) Data from: Optimisation of next generation sequencing transcriptome annotation for species lacking sequenced genomes. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.2v3h4
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