Data from: Conservation phylogeography: does historical diversity contribute to regional vulnerability in European tree frogs (Hyla arborea)

Dufresnes C, Wassef J, Ghali K, Brelsford A, Stöck M, Lymberakis P, Crnobrnja-Isailović J, Perrin N

Date Published: September 10, 2013

DOI: http://dx.doi.org/10.5061/dryad.2vk30

 

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Title Microsatellite genotypes of 750 tree frogs from 30 markers
Downloaded 35 times
Description The first column designates sample labels, and the second the population numbers (as in the figures of the paper). Null alleles appears as "0" and missing data as "NA". Genotypes were scored with GeneMapper 4.0 and null alleles detected with Microchecker (see the paper for details)
Download DufresnesEtAl_MolEcol_phylogeoHarborea_mic....xlsx (232.5 Kb)
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Title Sequence alignment of cytochrome-b
Downloaded 15 times
Description This includes 238 samples of H. arborea and 2 samples of H. orientalis
Download DufresnesEtAl_MolEcol_phylogeoHarborea_cyt-b.fas (239.4 Kb)
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Title Sequence alignment of the D-loop
Downloaded 8 times
Description This includes 238 samples from H. arborea and 2 samples from H. orientalis
Download DufresnesEtAl_MolEcol_phylogeoHarborea_D-loop.fas (148.7 Kb)
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Title Sequence alignment of rag-1
Downloaded 8 times
Description This includes 108 individuals of H. arborea, with two alleles for each individual (noted 1 and 2) for a total of 216 sequences. Haplotypes were reconstructed with the Phase algorithm of DNAsp. See the paper for details. The alignment also includes published sequences of four other Hylid species.
Download DufresnesEtAl_MolEcol_phylogeoHarborea_rag-1.fas (170.9 Kb)
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When using this data, please cite the original publication:

Dufresnes C, Wassef J, Ghali K, Brelsford A, Stöck M, Lymberakis P, Crnobrnja-Isailović J, Perrin N (2013) Conservation phylogeography: does historical diversity contribute to regional vulnerability in European tree frogs (Hyla arborea). Molecular Ecology 22(22): 5669–5684. http://dx.doi.org/10.1111/mec.12513

Additionally, please cite the Dryad data package:

Dufresnes C, Wassef J, Ghali K, Brelsford A, Stöck M, Lymberakis P, Crnobrnja-Isailović J, Perrin N (2013) Data from: Conservation phylogeography: does historical diversity contribute to regional vulnerability in European tree frogs (Hyla arborea). Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.2vk30
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