Data from: Antarctic krill population genomics: apparent panmixia, but genome complexity and large population size muddies the water

Deagle BE, Faux C, Kawaguchi S, Meyer B, Jarman SN

Date Published: September 3, 2015

DOI: http://dx.doi.org/10.5061/dryad.3023m

 

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Title 1 RAD-seq project info V2
Download 1 RAD-seq project info V2.zip (1.855 Mb)
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Title 2_Unique_RAD_Tags
Description Sequences of the unique RAD tags
Download 2_Unique_RAD_Tags.zip (14.17 Mb)
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Title 3a_BSP_pipeline_log
Description Parameters used to generate BAM/SAM files
Download 3a_BSP_pipeline_log.txt (189.4 Kb)
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Title 4 Variant call format files V2
Description Variant call format files derived from the RAD sequencing
Download 4 Variant call format files V2.zip (44.24 Mb)
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Title 5_VCF_extract_files
Description Data extracted from Variant Call Format files
Download 5_VCF_extract_files.zip (3.184 Mb)
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Title 6_R_code_count_PCA
Description Data and R code for principal component analysis (PCA) of the count data from the ‘Core Dataset’
Download 6_R_code_count_PCA.zip (3.144 Mb)
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Title 7_MtDNA_sequences
Description MtDNA sequence data for 142 krill. Two fragments were sequenced: 655 bp Cytochrome c Oxidase subunit I (COI) and 569 bp NADH Dehydrogenase subunit 1 (ND1).
Download 7_MtDNA_sequences.zip (69.35 Mb)
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Title Extra_Figure5_Sequences
Description Sequences of the RAD tags used to produce trees in Figure 5 of the paper (FASTA format)
Download Figure 5 sequences.zip (50.91 Kb)
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When using this data, please cite the original publication:

Deagle BE, Faux C, Kawaguchi S, Meyer B, Jarman SN (2015) Antarctic krill population genomics: apparent panmixia, but genome complexity and large population size muddies the water. Molecular Ecology 24(19): 4943–4959. http://dx.doi.org/10.1111/mec.13370

Additionally, please cite the Dryad data package:

Deagle BE, Faux C, Kawaguchi S, Meyer B, Jarman SN (2015) Data from: Antarctic krill population genomics: apparent panmixia, but genome complexity and large population size muddies the water. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.3023m
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