Data from: Genetic mapping of novel loci affecting canine blood phenotypes

White ME, Hayward JJ, Stokol T, Boyko AR

Date Published: January 6, 2016

DOI: http://dx.doi.org/10.5061/dryad.30c8p

 

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Title AmylaseALTGenotypes
Downloaded 28 times
Description Genotypes of dogs in the study at SNPs most highly associated with Amylase activity and ALT activity.
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Title cbc_dogs
Downloaded 19 times
Description Identification numbers of dogs for which Complete Blood Count data was included in the study.
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Title cbc_genos.bed
Downloaded 17 times
Description Bed file used in GWAS for CBC phenotypes.
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Title cbc_genos.bim
Downloaded 12 times
Description Bim file used in GWAS for CBC phenotypes.
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Title cbc_genos.fam
Downloaded 18 times
Description fam file used in GWAS for CBC phenotypes.
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Title ccp_dogs
Downloaded 11 times
Description Identification numbers of dogs for which Clinical Chemistry data was included in the study.
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Title ccp_genos.bed
Downloaded 14 times
Description Bed file used in GWAS for CCP phenotypes.
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Title ccp_genos.bim
Downloaded 12 times
Description Bim file used in GWAS for CCP phenotypes.
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Title ccp_genos.fam
Downloaded 15 times
Description Fam file used in GWAS for CCP phenotypes.
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Title cbc_resid
Downloaded 14 times
Description Residual values for Complete Blood Count phenotypes from linear model after correcting for age, sex and spay/neuter status, and body weight covariates.
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Title ccp_resid
Downloaded 16 times
Description Residual values for Clinical Chemistry Profile phenotypes from linear model after correcting for age, sex and spay/neuter status, and body weight covariates.
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Title CCPSickDogs
Downloaded 16 times
Description Raw data from Clinical Chemistry Profile of dogs with diagnosed or presumed liver disease/injury.
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Title CBCCCPValuesByBreedWithPlinkBasedMAF
Downloaded 19 times
Description Select Complete Blood Count and Clinical Chemistry values averaged by dog with breed information, breed name abbreviation, count of dogs per breed from which mean (healthy) ALT value was calculated, mean allele frequency for the SNP most highly associated with ALT activity per breed in our database (see manuscript for further explanation). Data used in Figure 3 of manuscript.
Download CBCCCPValuesByBreedWithPlinkBasedMAF.csv (655.9 Kb)
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Title CCPValuesGenoAveragedByDog
Downloaded 12 times
Description Clinical Chemistry phenotype data averaged by dog for 335 dogs selected as clinically healthy with genotype data for ALT activity and Amylase activity.
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Title PhenotypeKeyCBCResid
Downloaded 8 times
Description Key for column names for CBC Residual text file.
Download PhenotypeKeyCBCResid.txt (230 bytes)
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Title PhenotypeKeyCCPResid
Downloaded 24 times
Description Key for column names for CCP Residual text file.
Download PhenotypeKeyCCPResid.txt (413 bytes)
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Title PlinkBreedFreqForALTAssocSNP
Downloaded 14 times
Description List of breeds shown in figure 3 along with number of chromosomes (column 2 ) and number of dogs (column 3) on which mean allele frequency for breed was based.
Download PlinkBreedFreqForALTAssocSNP.txt (826 bytes)
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When using this data, please cite the original publication:

White ME, Hayward JJ, Stokol T, Boyko AR (2015) Genetic mapping of novel loci affecting canine blood phenotypes. PLOS ONE 10(12): e0145199. http://dx.doi.org/10.1371/journal.pone.0145199

Additionally, please cite the Dryad data package:

White ME, Hayward JJ, Stokol T, Boyko AR (2015) Data from: Genetic mapping of novel loci affecting canine blood phenotypes. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.30c8p
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