Data from: Evaluating summary methods for multi-locus species tree estimation in the presence of incomplete lineage sorting

Mirarab S, Bayzid MS, Warnow T

Date Published: August 27, 2014

DOI: http://dx.doi.org/10.5061/dryad.310q3

 

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Title Supplementary Online Material
Downloaded 74 times
Description This files includes supplementary material, including extra set of results, the model species trees used for simulation (as pdf), and the description of the exact commands used in the simulation study.
Download Mirarab2014-SOM.pdf (793.1 Kb)
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Title Simulated mammals - alignments
Downloaded 69 times
Description Simulated sequence data (fasta files) corresponding to true gene trees simulated on the mammalian dataset.
Download sequencedata.zip (332.7 Mb)
Download README.alignments (282 bytes)
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Title Simulated mammals - model species tree, true gene trees, and estimated species trees
Downloaded 36 times
Description A simulated dataset based on Song et al 2012 mammals phylogeny. This file includes model species tree, true gene trees, and estimated species trees. Refer to the other zip files for estimated gene trees and sequence data. This is the corrected version.
Download simulated-mammals.zip (14.34 Mb)
Download README (1.372 Kb)
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Title Simulated mammals - estimated gene trees
Downloaded 57 times
Description Estimated gene trees on the simulated mammals dataset. All the 200 bootstrap replicates and the maximum likelihood gene trees are given for all model conditions studied in the paper. All gene trees are estimated using RAxML.
Download genetrees.zip (298.9 Mb)
Download README.genetrees (1.208 Kb)
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Title Biological
Downloaded 17 times
Description Biological datasets. For Song et al 2012 biological dataset, gene trees, in addition to MRL and MP-EST species trees are included.
Download biological-mammals.zip (17.89 Mb)
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When using this data, please cite the original publication:

Mirarab S, Bayzid MS, Warnow T (2014) Evaluating summary methods for multi-locus species tree estimation in the presence of incomplete lineage sorting. Systematic Biology 65(3): 366-380. http://dx.doi.org/10.1093/sysbio/syu063

Additionally, please cite the Dryad data package:

Mirarab S, Bayzid MS, Warnow T (2014) Data from: Evaluating summary methods for multi-locus species tree estimation in the presence of incomplete lineage sorting. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.310q3
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