Data from: Salinity tolerance loci revealed in rice using high-throughput non-invasive phenotyping

Al-Tamimi N, Brien C, Oakey H, Berger B, Saade S, Ho YS, Schmöckel SM, Tester M, Negrão S

Date Published: November 18, 2016

DOI: http://dx.doi.org/10.5061/dryad.3118j

 

Files in this package

Content in the Dryad Digital Repository is offered "as is." By downloading files, you agree to the Dryad Terms of Service. To the extent possible under law, the authors have waived all copyright and related or neighboring rights to this data. CC0 (opens a new window) Open Data (opens a new window)

Title Data and scripts for data preparation and phenotypic analysis
Downloaded 351 times
Description The zip file contains the data and code files that were used in the data preparation and phenotypic analysis phases for the two rice experiments reported Al-Tamimi et al.: experiment 0254 that investigates an indica panel and experiment 0255 that investigates an aus panel.
Download Phenotyping_data_and_scripts.zip (39.83 Mb)
Download README.pdf (176.1 Kb)
Details View File Details
Title Data and scripts for GWAS
Downloaded 405 times
Description The zip file contains the data and code files that were used in the genome wide association study (GWAS) phase for the two experiments reported by Al-Tamimi et al.: experiment 0254 that investigates an indica panel and experiment 0255 that investigates an aus panel. In addition, the combined panel (INDAUS) was subject to a GWAS.
Download GWAS_data_and_scripts.zip (114.1 Mb)
Download README.pdf (167.8 Kb)
Details View File Details
Title imageData: an R package that aids in processing and plotting data from a Lemna-Tec Scananalyzer
Description The R package imageData extracts traits from imaging data produced using a Lemna-Tec Scananalyzer. Growth rates between successive imagings are obtained and those for a nominated set of intervals can also be calculated. Profile or longitudinal plots of the traits and growth rates can be produced. It is available at http://cran.at.r-project.org/web/packages/imageData/index.html.
Download //cran.at.r-project.org/web/packages/image....html (0 bytes)
Details View File Details

When using this data, please cite the original publication:

Al-Tamimi N, Brien C, Oakey H, Berger B, Saade S, Ho YS, Schmöckel SM, Tester M, Negrão S (2016) Salinity tolerance loci revealed in rice using high-throughput non-invasive phenotyping. Nature Communications 7: 13342. http://dx.doi.org/10.1038/ncomms13342

Additionally, please cite the Dryad data package:

Al-Tamimi N, Brien C, Oakey H, Berger B, Saade S, Ho YS, Schmöckel SM, Tester M, Negrão S (2016) Data from: Salinity tolerance loci revealed in rice using high-throughput non-invasive phenotyping. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.3118j
Cite | Share
Download the data package citation in the following formats:
   RIS (compatible with EndNote, Reference Manager, ProCite, RefWorks)
   BibTex (compatible with BibDesk, LaTeX)

Search for data

Be part of Dryad

We encourage organizations to: