Data from: Sequencing historical specimens: successful preparation of small specimens with low amounts of degraded DNA

Sproul JS, Maddison DR

Date Published: February 10, 2017

DOI: http://dx.doi.org/10.5061/dryad.31g05

 

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Title breveGroupContextAnalyses
Downloaded 6 times
Description The NEXUS file written for Mesquite which was used to assess accuracy of sequences obtained from Illumina sequencing of historical specimens in the breve species group (Bembidion, Carabidae) through phylogenic analysis alongside sequences from non-historical specimens. The file contains matricies for seven genes and the trees produced by the analyses.
Download breveGroupContextAnalyses.nex (238.3 Kb)
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Title LionephaContextAnalyses
Downloaded 6 times
Description The NEXUS file written for Mesquite which was used to assess accuracy of sequences obtained from Illumina sequencing of historical specimens in the genus Lionepha (Carabidae) through phylogenic analysis alongside sequences from non-historical specimens. The file contains matricies for seven genes and the trees produced by the analyses.
Download LionephaContextAnalyses.nex (387.6 Kb)
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Title obscuripenneGroupContextAnalyses
Downloaded 4 times
Description The NEXUS file written for Mesquite which was used to assess accuracy of sequences obtained from Illumina sequencing of historical specimens in the obscuripenne species group (Bembidion, Carabidae) through phylogenic analysis alongside sequences from non-historical specimens. The file contains matricies for seven genes and the trees produced by the analyses.
Download obscuripenneGroupContextAnalyses.nex (286.2 Kb)
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Title TrepanedorisContextAnalyses
Downloaded 7 times
Description The NEXUS file written for Mesquite which was used to assess accuracy of sequences obtained from Illumina sequencing of historical specimens in subgenus Trepanedoris (Bembidion, Carabidae) through phylogenic analysis alongside sequences from non-historical specimens. The file contains matricies for seven genes and the trees produced by the analyses.
Download TrepanedorisContextAnalyses.nex (136.7 Kb)
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Title NotaphusContextAnalyses
Downloaded 5 times
Description The NEXUS file written for Mesquite which was used to assess accuracy of sequences obtained from Illumina sequencing of historical specimens in subgenus Notaphus (Bembidion, Carabidae) through phylogenic analysis alongside sequences from non-historical specimens. The file contains matricies for seven genes and the trees produced by the analyses.
Download NotaphusContextAnalyses.nex (138.6 Kb)
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Title DNA3890 de novo assembly
Downloaded 5 times
Description List of contigs generated from the de novo assembly in CLC Genomics Workbench
Download lane6-s018-indexD712-D502-AGCGATAG-GCCTCT...st.fas (103.3 Mb)
Details View File Details
Title DNA3782 de novo assembly
Downloaded 3 times
Description List of contigs generated from the de novo assembly in CLC Genomics Workbench
Download lane5-index05-ACAGTG-3782_ACAGTG_L005_R1_...st.fas (197.7 Mb)
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Title DNA4233 de novo assembly
Downloaded 4 times
Description List of contigs generated from the de novo assembly in CLC Genomics Workbench
Download lane6-s001-indexD705-D505-ATTCAGAA-CTTCGC...st.fas (173.8 Mb)
Details View File Details
Title LIB0217 de novo assembly
Downloaded 4 times
Description List of contigs generated from the de novo assembly in CLC Genomics Workbench
Download lane2-s096-indexD711-D504-TCTCGCGC-TCAGAG...st.fas (109.8 Mb)
Details View File Details
Title LIB0216 de novo assembly
Downloaded 5 times
Description List of contigs generated from the de novo assembly in CLC Genomics Workbench
Download lane2-s095-indexD710-D505-TCCGCGAA-CTTCGC...st.fas (262.7 Mb)
Details View File Details
Title LIB0213 de novo assembly
Downloaded 7 times
Description List of contigs generated from the de novo assembly in CLC Genomics Workbench
Download lane1-s009-indexD706-D504-GAATTCGT-TCAGAG...st.fas (11.40 Mb)
Details View File Details
Title LIB0179 de novo assembly
Downloaded 6 times
Description List of contigs generated from the de novo assembly in CLC Genomics Workbench
Download lane1-s002-indexD707-D504-CTGAAGCT-TCAGAG...st.fas (5.310 Mb)
Details View File Details
Title LIB0178 de novo assembly
Downloaded 4 times
Description List of contigs generated from the de novo assembly in CLC Genomics Workbench
Download lane7-s857-indexD706-D506-GAATTCGT-TAAGAT...st.fas (8.925 Mb)
Details View File Details
Title LIB0182 de novo assembly
Downloaded 5 times
Description List of contigs generated from the de novo assembly in CLC Genomics Workbench
Download lane1-s003-indexD711-D506-TCTCGCGC-TAAGAT...st.fas (16.83 Mb)
Details View File Details
Title LIB0171 de novo assembly
Downloaded 6 times
Description List of contigs generated from the de novo assembly in CLC Genomics Workbench
Download lane7-s854-indexD710-D504-TCCGCGAA-TCAGAG...st.fas (113.1 Mb)
Details View File Details
Title LIB0175 de novo assembly
Downloaded 5 times
Description List of contigs generated from the de novo assembly in CLC Genomics Workbench
Download lane7-s855-indexD702-D508-TCCGGAGA-GTCAGT...st.fas (71.57 Mb)
Details View File Details
Title LIB0154 de novo assembly
Downloaded 5 times
Description List of contigs generated from the de novo assembly in CLC Genomics Workbench
Download lane7-s851-indexD708-D502-TAATGCGC-GCCTCT...st.fas (1.106 Mb)
Details View File Details
Title LIB0153 de novo assembly
Downloaded 4 times
Description List of contigs generated from the de novo assembly in CLC Genomics Workbench
Download lane7-s850-indexD704-D508-GAGATTCC-GTCAGT...st.fas (3.079 Mb)
Details View File Details
Title LIB0184 de novo assembly
Downloaded 6 times
Description List of contigs generated from the de novo assembly in CLC Genomics Workbench
Download lane7-s859-indexD707-D505-CTGAAGCT-CTTCGC...st.fas (14.75 Mb)
Details View File Details
Title LIB0147 de novo assembly
Downloaded 5 times
Description List of contigs generated from the de novo assembly in CLC Genomics Workbench
Download lane6-s840-indexD705-D506-ATTCAGAA-TAAGAT...st.fas (137.4 Mb)
Details View File Details
Title LIB0157 de novo assembly
Downloaded 4 times
Description List of contigs generated from the de novo assembly in CLC Genomics Workbench
Download lane7-s853-indexD702-D506-TCCGGAGA-TAAGAT...st.fas (22.08 Mb)
Details View File Details
Title LIB0177 de novo assembly
Downloaded 5 times
Description List of contigs generated from the de novo assembly in CLC Genomics Workbench
Download lane7-s856-indexD705-D502-ATTCAGAA-GCCTCT...st.fas (7.318 Mb)
Details View File Details
Title LIB0181 de novo assembly
Downloaded 5 times
Description List of contigs generated from the de novo assembly in CLC Genomics Workbench
Download lane7-s858-indexD710-D503-TCCGCGAA-AGGATA...st.fas (14.82 Mb)
Details View File Details
Title LIB0210 de novo assembly
Downloaded 6 times
Description List of contigs generated from the de novo assembly in CLC Genomics Workbench
Download lane1-s006-indexD708-D501-TAATGCGC-AGGCTA...st.fas (9.183 Mb)
Details View File Details
Title LIB0180 de novo assembly
Downloaded 3 times
Description List of contigs generated from the de novo assembly in CLC Genomics Workbench
Download lane6-s847-indexD708-D505-TAATGCGC-CTTCGC...st.fas (77.82 Mb)
Details View File Details
Title LIB0183 de novo assembly
Downloaded 7 times
Description List of contigs generated from the de novo assembly in CLC Genomics Workbench
Download lane6-s848-indexD712-D501-AGCGATAG-AGGCTA...st.fas (32.85 Mb)
Details View File Details
Title LIB0176 de novo assembly
Downloaded 4 times
Description List of contigs generated from the de novo assembly in CLC Genomics Workbench
Download lane6-s009-indexD704-D502-GAGATTCC-GCCTCT...st.fas (78.65 Mb)
Details View File Details
Title LIB0155 de novo assembly
Downloaded 7 times
Description List of contigs generated from the de novo assembly in CLC Genomics Workbench
Download lane7-s852-indexD705-D503-ATTCAGAA-AGGATA...st.fas (90.81 Mb)
Details View File Details
Title LIB0164 de novo assembly
Downloaded 7 times
Description List of contigs generated from the de novo assembly in CLC Genomics Workbench
Download lane6-s843-indexD703-D508-CGCTCATT-GTCAGT...st.fas (15.12 Mb)
Details View File Details
Title LIB0168 de novo assembly
Downloaded 6 times
Description List of contigs generated from the de novo assembly in CLC Genomics Workbench
Download lane6-s845-indexD709-D502-CGGCTATG-GCCTCT...st.fas (107.9 Mb)
Details View File Details
Title LIB0167 de novo assembly
Downloaded 7 times
Description List of contigs generated from the de novo assembly in CLC Genomics Workbench
Download lane6-s844-indexD706-D501-GAATTCGT-AGGCTA...st.fas (82.60 Mb)
Details View File Details
Title LIB0173 de novo assembly
Downloaded 4 times
Description List of contigs generated from the de novo assembly in CLC Genomics Workbench
Download lane6-s846-indexD707-D503-CTGAAGCT-AGGATA...st.fas (22.84 Mb)
Details View File Details
Title LIB0149 de novo assembly
Downloaded 6 times
Description List of contigs generated from the de novo assembly in CLC Genomics Workbench
Download lane6-s841-indexD701-D503-ATTACTCG-AGGATA...st.fas (10.83 Mb)
Details View File Details
Title LIB0186 de novo assembly
Downloaded 4 times
Description List of contigs generated from the de novo assembly in CLC Genomics Workbench
Download lane1-s004-indexD704-D507-GAGATTCC-ACGTCC...st.fas (3.394 Mb)
Details View File Details
Title LIB0185 de novo assembly
Downloaded 4 times
Description List of contigs generated from the de novo assembly in CLC Genomics Workbench
Download lane6-s849-indexD706-D504-GAATTCGT-TCAGAG...st.fas (18.92 Mb)
Details View File Details
Title LIB0150 de novo assembly
Downloaded 5 times
Description List of contigs generated from the de novo assembly in CLC Genomics Workbench
Download lane6-s842-indexD702-D504-TCCGGAGA-TCAGAG...st.fas (3.056 Mb)
Details View File Details
Title DNA3205 de novo assembly
Downloaded 8 times
Description List of contigs generated from the de novo assembly in CLC Genomics Workbench
Download lane4_NoIndex_L004_R1_001 (paired) trimme...st.fas (288.3 Mb)
Details View File Details

When using this data, please cite the original publication:

Sproul JS, Maddison DR (2017) Sequencing historical specimens: successful preparation of small specimens with low amounts of degraded DNA. Molecular Ecology Resources, online in advance of print. http://dx.doi.org/10.1111/1755-0998.12660

Additionally, please cite the Dryad data package:

Sproul JS, Maddison DR (2017) Data from: Sequencing historical specimens: successful preparation of small specimens with low amounts of degraded DNA. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.31g05
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