Data from: Ultraconserved elements sequencing as a low-cost source of complete mitochondrial genomes and microsatellite markers in non-model amniotes

do Amaral FR, Neves LG, Resende Jr. MFR, Mobili F, Miyaki CY, Pellegrino KCM, Biondo C

Date Published: September 20, 2015

DOI: http://dx.doi.org/10.5061/dryad.33656

 

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Title Poospiza cabanisi, isolate FRA67, UCE data, raw sequences, end 1
Downloaded 10 times
Description Raw sequences resulting from sequence capture of 634 UCE loci obtained from Poospiza cabanisi, isolate FRA67. End 1 from Illumina paired-end run.
Download Pcabanisi_FRA67_End_1.fastq.gz (208.7 Mb)
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Title Poospiza cabanisi, isolate FRA67, UCE data, raw sequences, end 2
Downloaded 5 times
Description Raw sequences resulting from sequence capture of 634 UCE loci obtained from Poospiza cabanisi, isolate FRA67. End 2 from Illumina paired-end run.
Download Pcabanisi_FRA67_End_2.fastq.gz (211.8 Mb)
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Title Poospiza lateralis, isolate FRA46, UCE data, raw sequences, end 1
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Description Raw sequences resulting from sequence capture of 634 UCE loci obtained from Poospiza lateralis, isolate FRA46. End 1 from Illumina paired-end run.
Download Plateralis_FRA46_End_1.fastq.gz (311.3 Mb)
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Title Poospiza lateralis, isolate FRA46, UCE data, raw sequences, end 2
Downloaded 5 times
Description Raw sequences resulting from sequence capture of 634 UCE loci obtained from Poospiza lateralis, isolate FRA46. End 2 from Illumina paired-end run.
Download Plateralis_FRA46_End_2.fastq.gz (310.3 Mb)
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Title Poospiza thoracica, isolate SC04, UCE data, raw sequences, end 1
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Description Raw sequences resulting from sequence capture of 634 UCE loci obtained from Poospiza thoracica, isolate SC04. End 1 from Illumina paired-end run.
Download Pthoracica_SC04_End_1.fastq.gz (244.9 Mb)
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Title Poospiza thoracica, isolate SC04, UCE data, raw sequences, end 2
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Description Raw sequences resulting from sequence capture of 634 UCE loci obtained from Poospiza thoracica, isolate SC04. End 2 from Illumina paired-end run.
Download Pthoracica_SC04_End_2.fastq.gz (243.8 Mb)
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Title Poospiza cabanisi, isolate FRA67, assembly
Downloaded 3 times
Description Trinity assembly based on data from sequence capture of 643 UCE loci of Poospiza cabanisi, isolate FRA67.
Download Pcabanisi_FRA67_assembly.fasta (2.967 Mb)
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Title Poospiza lateralis, isolate FRA46, assembly
Downloaded 5 times
Description Trinity assembly based on data from sequence capture of 643 UCE loci of Poospiza lateralis, isolate FRA46.
Download Plateralis_FRA46_assembly.fasta (3.906 Mb)
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Title Poospiza thoracica, isolate SC04, assembly
Downloaded 4 times
Description Trinity assembly based on data from sequence capture of 643 UCE loci of Poospiza thoracica, isolate SC04.
Download Pthoracica_SC04_assembly.fasta (3.446 Mb)
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Title 650 probe set used to capture 643 UCE loci
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Description 650 probes
Download UCE_probeset.xls (146.9 Kb)
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When using this data, please cite the original publication:

do Amaral FR, Neves LG, Resende Jr. MFR, Mobili F, Miyaki CY, Pellegrino KCM, Biondo C (2015) Ultraconserved elements sequencing as a low-cost source of complete mitochondrial genomes and microsatellite markers in non-model amniotes. PLoS ONE 10(9): e0138446. http://dx.doi.org/10.1371/journal.pone.0138446

Additionally, please cite the Dryad data package:

do Amaral FR, Neves LG, Resende Jr. MFR, Mobili F, Miyaki CY, Pellegrino KCM, Biondo C (2015) Data from: Ultraconserved elements sequencing as a low-cost source of complete mitochondrial genomes and microsatellite markers in non-model amniotes. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.33656
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