Data from: Unexpected cryptic species diversity in the widespread coral Seriatopora hystrix masks spatial-genetic patterns of connectivity

Warner PA, van Oppen MJH, Willis BL

Date Published: March 11, 2016

DOI: http://dx.doi.org/10.5061/dryad.33h50.2

 

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Title Genotypes_Seriatopora spp. GBR
Description Genotype data for all 965 individuals at 10 loci
Download Genotypes0316.csv (82.08 Kb)
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Title Population Allele Frequencies_ Seriatopora spp. GBR
Description The input population allele frequencies used to calculate Da distance for 30 populations examined in the study.
Download PopAlleleFreqNJtree.csv (16.40 Kb)
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Title Da Distance Matrix_Seriatopora spp. GBR
Description Input file of Da Distance used to calculate NJ trees.
Download DaDistMatrixNJtree.csv (5.51 Kb)
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Title Pairwise Population G"st Matrix_Seriatopora spp. GBR
Description Matrix of pairwise population G"st estimates.
Download GstMatrix.csv (8.401 Kb)
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Title Pairwise Population Fst Matrix_Seriatopora spp. GBR
Description Matrix of pairwise population Fst estimates.
Download FstMatrix.csv (8.415 Kb)
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Title Pairwise Population Geographic Distance Matrix_Seriatopora spp. GBR
Description Matrix of pairwise geographic distances among populations, Ln(d+1)
Download GeoDistMatrix.csv (4.104 Kb)
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Title Structure input_Seriatopora spp. GBR
Description Input file used for hierarchical structure analyses.
Download Structure input.csv (84.58 Kb)
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Title Structure parameters_Seriatopora spp. GBR
Description The parameters used for hierarchical structure analyses: project parameters, correlated allele frequency model parameters, independent allele frequency model parameters.
Download Structure parameters.csv (2.924 Kb)
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Title Medium length mtDNA haplotype alignment_Seriatopora spp.
Description Alignment of mtDNA haplotypes used in the medium length alignment (~811bp)
Download Medium_mtDNAhapalign.csv (13.44 Kb)
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Title Short length mtDNA haplotype alignment_Seriatopora spp.
Description Alignment of mtDNA haplotypes used at shortest length (629bp)
Download Short_mtDNAhapalign.csv (11.29 Kb)
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Title Long length mtDNA haplotype alignment_Seriatopora spp.
Description MtDNA haplotype alignment of longest length sequences: 1388bp
Download Long_mtDNAhapalign.csv (21.17 Kb)
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Title W. Lizard mtDNA sequence alignment_Seriatopora spp. GBR
Description Alignment of full sequences of all 39 individuals sequenced from the W. Lizard site in this study.
Download WL_fullseqalignment.csv (13.80 Kb)
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Title Master Worksheet of All Data 2re _Seriatopora spp. GBR
Description This Excel file is a worksheet containing tabs for each csv file uploaded to Dryad: master summary table of all individuals, genotypes, allele frequencies for calculation of Da distance for NJ tree, Da distance matrix, matrix of pairwise population G"st, matrix of pairwise population Fst, matrix of pairwise population geographic distances, structure input, structure parameters, medium length haplotype alignment, short length haplotype alignment, long length haplotype alignment, alignment of full sequences from individuals from W Lizard.
Download Species_Master Table2_042315.xls (701.4 Kb)
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Title Master Summary Table 2re_Seriatopora spp. GBR
Description This is a summary table of each individual used in the study, including the following data: sample name, designated species according to publication, population, mtDNA amplicon size, Symbiodinium ITS2 sequence, Lat/ Long, Habitat, Geographic Region, and Genbank Accession numbers.
Download Master Table 2.csv (65.64 Kb)
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When using this data, please cite the original publication:

Warner PA, van Oppen MJH, Willis BL (2015) Unexpected cryptic species diversity in the widespread coral Seriatopora hystrix masks spatial-genetic patterns of connectivity. Molecular Ecology 24(12): 2993-3008. http://dx.doi.org/10.1111/mec.13225

Additionally, please cite the Dryad data package:

Warner PA, van Oppen MJH, Willis BL (2015) Data from: Unexpected cryptic species diversity in the widespread coral Seriatopora hystrix masks spatial-genetic patterns of connectivity. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.33h50.2
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