Data from: Tempo and mode of antibat ultrasound production and sonar jamming in the diverse hawkmoth radiation

Kawahara AY, Barber JR

Date Published: May 8, 2015

DOI: http://dx.doi.org/10.5061/dryad.3450r

 

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Title Hawkmoth.202tx.BEAST.tre
Downloaded 27 times
Description BEAST tree file.
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Title Hawkmoth.202tx.nex
Downloaded 9 times
Description Nexus sequence dataset file for the 6 concatenated genes with charset block and MrBayes model specifications. This was the original file used to run analyses. Some taxon names changed during the study, thus, the names differ slightly from the trees presented in the main portion of the paper (which have the updated names).
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Title Hawkmoth.202tx.xml
Downloaded 12 times
Description XML input file for the BEAST analysis.
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Title r8s.commandfile.nex
Downloaded 4 times
Description Command file for the r8s analysis.
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Title r8s.tre
Downloaded 13 times
Description Output tree file from the r8s analysis. This tree was used for the BEAST analysis.
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Title RAxML.constraint.tre
Downloaded 10 times
Description Topological constraint, based on published transcriptomic analyses, applied to several analyses in the current study.
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Title Hawkmoth.202tx.RAxML.ML.nt123.tre
Downloaded 16 times
Description ML tree from RAxML analysis of the 6 concatenated gene dataset. Synonymous and non-synonymous changes for all codon positions included (nt123). Taxon names reflect the accepted taxonomic names when the paper was published.
Download Hawkmoth.RAxML.202tx.ML.nt123.tre (15.37 Kb)
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Title Hawkmoth.202tx.RAxML.ML.degen1.tre
Downloaded 14 times
Description ML tree from RAxML analysis of the concatenated dataset using degeneracy coding (degen1, removing synonymous changes).
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Title Hawkmoth.202tx.fullnames.nex
Downloaded 11 times
Description Nexus sequence dataset file for the 6 concatenated genes with charset block and MrBayes model specifications. Taxon names reflect the accepted taxonomic names when the paper was published.
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Title Hawkmoth.202tx.MrBayes.tre
Downloaded 7 times
Description Bayesian tree from the MrBayes analysis of the 6 concatenated gene dataset. Synonymous and non-synonymous changes for all codon positions included (nt123).
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When using this data, please cite the original publication:

Kawahara AY, Barber JR (2015) Tempo and mode of antibat ultrasound production and sonar jamming in the diverse hawkmoth radiation. Proceedings of the National Academy of Sciences of the United States of America 112(20): 6407-6412. http://dx.doi.org/10.1073/pnas.1416679112

Additionally, please cite the Dryad data package:

Kawahara AY, Barber JR (2015) Data from: Tempo and mode of antibat ultrasound production and sonar jamming in the diverse hawkmoth radiation. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.3450r
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