Data from: Transcriptomic basis of genome by genome variation in a legume-rhizobia mutualism

Burghardt LT, Guhlin J, Chun CL, Liu J, Stupar RM, Sadowsky MJ, Young ND, Tiffin P

Date Published: August 9, 2017

DOI: https://doi.org/10.5061/dryad.348k2

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Title HxSPhenotypingData
Downloaded 16 times
Description Tab delimited raw symbiosis phenotype data
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Title HxSPhenotypeAnalysis
Downloaded 8 times
Description R code to analyze the raw symbiosis phenotypes
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Title ExpressedNodGenesTable
Downloaded 25 times
Description Tab delimited file that summarizes expression category results and cluster membership for all the genes found to be expressed in nodules
Download README.zip (1.444 Kb)
Download ExpressedGenesNodTableDryad.txt (6.872 Mb)
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Title RNAseqcounts_allconditions_head
Downloaded 18 times
Description A tab delimited file containing raw gene counts of all RNAseq samples and for all Mtv4 genes
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Title DESeq2code
Downloaded 9 times
Description R source code for the differential expression analysis
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Title FullModelHostSymResults
Downloaded 23 times
Description Tab delimited file with DEseq2 output summarizing full model results for all genes expressed in nodules. Tabulated and compiled versions of the significance category results are in the ExpressedNodGenesTable.txt file which should be sufficient for most interested parties.
Download FullModelHostSymResults.txt (9.716 Mb)
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Title FullModelRootResults
Downloaded 14 times
Description Tab delimited file testing if host genotypes different in gene expression in roots. This is not emphasized in the paper but I included it in case anyone was interested.
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Download FullModelRootResults.txt (2.173 Mb)
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Title PairwiseResults.101.340
Downloaded 8 times
Description Tab delimited file with pairwise test results and log fold changes in expression between HM101 and HM340 nodules containing E. medicae and E. meliloti
Download PairwiseResults.101.340.txt (12.84 Mb)
Download README.rtf (2.249 Kb)
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Title PairwiseResults.101.056
Downloaded 10 times
Description Tab delimited file with pairwise test results and log fold changes in expression between HM101 and HM056 nodules containing E. medicae and E. meliloti
Download README.rtf (2.249 Kb)
Download PairwiseResults.101.056.txt (12.80 Mb)
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Title PairwiseResults.101.034
Downloaded 14 times
Description Tab delimited file with pairwise test results and log fold changes in expression between HM101 and HM034 nodules containing E. medicae and E. meliloti
Download README.rtf (2.249 Kb)
Download PairwiseResults.101.034.txt (12.73 Mb)
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Title PairwiseResults.056.340
Downloaded 19 times
Description Tab delimited file with pairwise test results and log fold changes in expression between HM056 and HM340 nodules containing E. medicae and E. meliloti
Download README.rtf (2.249 Kb)
Download PairwiseResults.056.340.txt (12.94 Mb)
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Title PairwiseResults.034.056
Downloaded 13 times
Description Tab delimited file with pairwise test results and log fold changes in expression between HM034 and HM056 nodules containing E. medicae and E. meliloti
Download README.rtf (2.249 Kb)
Download PairwiseResults.034.056.txt (12.56 Mb)
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Title PairwiseResults.034.340
Downloaded 12 times
Description Tab delimited file with pairwise test results and log fold changes in expression between HM034 and HM340 nodules containing E. medicae and E. meliloti
Download README.rtf (2.249 Kb)
Download PairwiseResults.034.340.txt (12.91 Mb)
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When using this data, please cite the original publication:

Burghardt LT, Guhlin J, Chun CL, Liu J, Sadowsky MJ, Stupar RM, Young ND, Tiffin P (2017) Transcriptomic basis of genome by genome variation in a legume-rhizobia mutualism. Molecular Ecology 26(21): 6122-6135. https://doi.org/10.1111/mec.14285

Additionally, please cite the Dryad data package:

Burghardt LT, Guhlin J, Chun CL, Liu J, Stupar RM, Sadowsky MJ, Young ND, Tiffin P (2017) Data from: Transcriptomic basis of genome by genome variation in a legume-rhizobia mutualism. Dryad Digital Repository. https://doi.org/10.5061/dryad.348k2
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