Data from: Parallel tagged amplicon sequencing of transcriptome-based genetic markers for Triturus newts with the Ion Torrent next-generation sequencing platform

Wielstra B, Duijm E, Lagler P, Lammers Y, Meilink WRM, Ziermann JM, Arntzen JW

Date Published: February 19, 2014

DOI: http://dx.doi.org/10.5061/dryad.36775

 

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Title Triturus transcriptome-based gene models in FASTA format
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Description Triturus transcriptome-based gene models in FASTA format
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Title Excel sheet and macro to compose multiplexes
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Description Excel sheet and macro to compose multiplexes
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Title Raw Ion Torrent reads in FASTQ format
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Description Raw Ion Torrent reads in FASTQ format
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Title BWA alignments in SAM format
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Description BWA alignments in SAM format
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Title Raw SNP reports in VCF format
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Description Raw SNP reports in VCF format
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Title FASTA files of reconstructed sequences
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Description FASTA files of reconstructed sequences
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Title Input files for the BAPS analysis (in GENEPOP format), NewHybrids and HIest.
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Description Input files for the BAPS analysis (in GENEPOP format), NewHybrids and HIest.
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Title Script associated with the bioinformatics pipeline
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Description Script associated with the bioinformatics pipeline. The first script strings the programs together (used in Linux environment). The second script determines the SNPs and allelic variants. The third script creates the consensus sequences.
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When using this data, please cite the original publication:

Wielstra B, Duijm E, Lagler P, Lammers Y, Meilink WRM, Ziermann JM, Arntzen JW (2014) Parallel tagged amplicon sequencing of transcriptome-based genetic markers for Triturus newts with the Ion Torrent next-generation sequencing platform. Molecular Ecology Resources 14(5): 1080-1089. http://dx.doi.org/10.1111/1755-0998.12242

Additionally, please cite the Dryad data package:

Wielstra B, Duijm E, Lagler P, Lammers Y, Meilink WRM, Ziermann JM, Arntzen JW (2014) Data from: Parallel tagged amplicon sequencing of transcriptome-based genetic markers for Triturus newts with the Ion Torrent next-generation sequencing platform. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.36775
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