Data from: De novo transcriptome assemblies of four accessions of the metal hyperaccumulator plant Noccaea caerulescens

Blande D, Halimaa P, Tervahauta AI, Aarts MGM, Kärenlampi SO

Date Published: January 13, 2017

DOI: http://dx.doi.org/10.5061/dryad.380n3

 

Files in this package

Content in the Dryad Digital Repository is offered "as is." By downloading files, you agree to the Dryad Terms of Service. To the extent possible under law, the authors have waived all copyright and related or neighboring rights to this data. CC0 (opens a new window) Open Data (opens a new window)

Title GAk32 transcriptome annotation
Downloaded 13 times
Description Annotation of the GAK32 (Ganges accession) de novo assembly. Annotation was performed using the Trinotate pipeline. Ortholog clustering was performed using OrthoFinder. Ortholog groups and the corresponding A. thaliana TAIR codes have been combined with the Trinotate annotation.
Download GAk32_annotation_final.xlsx (32.23 Mb)
Details View File Details
Title LCk32 transcriptome annotation
Downloaded 11 times
Description Annotation of the LCK32 (La Calamine accession) de novo assembly. Annotation was performed using the Trinotate pipeline. Ortholog clustering was performed using OrthoFinder. Ortholog groups and the corresponding A thaliana TAIR codes have been combined with the Trinotate annotation.
Download LCk32_annotation_final.xlsx (32.29 Mb)
Details View File Details
Title LEk32 transcriptome annotation
Downloaded 8 times
Description Annotation of the LEK32 (Lellingen accession) de novo assembly. Annotation was performed using the Trinotate pipeline. Ortholog clustering was performed using OrthoFinder. Ortholog groups and the corresponding A thaliana TAIR codes have been combined with the Trinotate annotation.
Download LEk32_annotation_final.xlsx (32.46 Mb)
Details View File Details
Title MPk32 transcriptome annotation
Downloaded 12 times
Description Annotation of the MPK32 (Monte Prinzera accession) de novo assembly. Annotation was performed using the Trinotate pipeline. Ortholog clustering was performed using OrthoFinder. Ortholog groups and the corresponding A thaliana TAIR codes have been combined with the Trinotate annotation.
Download MPk32_annotation_final.xlsx (33.37 Mb)
Details View File Details
Title Fasta files of ortholog groups
Downloaded 14 times
Description A zip archive containing the fasta files of the protein sequences clustered into ortholog groups by OrthoFinder.
Download fasta.zip (28.97 Mb)
Details View File Details
Title Python code - taxonomic group
Downloaded 17 times
Description Python code to extract the taxonomic group after blast search.
Download python_tax_code.py (1.045 Kb)
Details View File Details

When using this data, please cite the original publication:

Blande D, Halimaa P, Tervahauta AI, Aarts MGM, Kärenlampi SO (2017) De novo transcriptome assemblies of four accessions of the metal hyperaccumulator plant Noccaea caerulescens. Scientific Data 4: 160131. http://dx.doi.org/10.1038/sdata.2016.131

Additionally, please cite the Dryad data package:

Blande D, Halimaa P, Tervahauta AI, Aarts MGM, Kärenlampi SO (2017) Data from: De novo transcriptome assemblies of four accessions of the metal hyperaccumulator plant Noccaea caerulescens. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.380n3
Cite | Share
Download the data package citation in the following formats:
   RIS (compatible with EndNote, Reference Manager, ProCite, RefWorks)
   BibTex (compatible with BibDesk, LaTeX)

Search for data

Be part of Dryad

We encourage organizations to: