Data from: Integrated analyses resolve conflicts over squamate reptile phylogeny and reveal unexpected placements for fossil taxa

Reeder TW, Townsend TM, Mulcahy DG, Noonan BP, Wood PL, Sites Jr. JW, Wiens JJ

Date Published: March 27, 2015

DOI: http://dx.doi.org/10.5061/dryad.38417

 

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Title combined-all-taxa-ML.phy
Description Combined DNA and morphological data for all taxa of squamate study
Download combined-all-taxa-ML.phy.txt (7.424 Mb)
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Title weighted combined analyses
Description Data files used in the combined data weighted analyses where the DNA data was recoded to 63 binary characters.
Download weighted combined analyses.zip (197.2 Kb)
Download README.txt (275 bytes)
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Title morphological partition analyses
Description Data sets used in the morphological partition analyses
Download morphological partition analyses.zip (220.9 Kb)
Download README.txt (210 bytes)
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Title squamateDNA-Bayes
Description This data file used for the DNA only Bayesian analyses of extant taxa. The same data and alignments used in the ML and parsimony analyses.
Download squamateDNA-Bayes.nex (5.369 Mb)
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Title morphology_alltaxa
Description MrBayes formatted file for Bayesian analyses including ordered multistate characters. The same character matrix was also used in the Bayesian analyses and parsimony analyses with all characters as unordered.
Download morphology_alltaxa.nex (146.9 Kb)
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Title morphology_alltaxa_ML
Description Morphological data matrix for ML analyses of all taxa.
Download morphology_alltaxa_ML.phy (138.4 Kb)
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When using this data, please cite the original publication:

Reeder TW, Townsend TM, Mulcahy DG, Noonan BP, Wood PL, Sites Jr JW, Wiens JJ (2015) Integrated analyses resolve conflicts over squamate reptile phylogeny and reveal unexpected placements for fossil taxa. PLoS ONE 10(3): e0118199. http://dx.doi.org/10.1371/journal.pone.0118199

Additionally, please cite the Dryad data package:

Reeder TW, Townsend TM, Mulcahy DG, Noonan BP, Wood PL, Sites Jr. JW, Wiens JJ (2015) Data from: Integrated analyses resolve conflicts over squamate reptile phylogeny and reveal unexpected placements for fossil taxa. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.38417
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