Data from: Population genomics reveals multiple drivers of population differentiation in a sex-role-reversed pipefish

Flanagan SP, Rose E, Jones AG

Date Published: July 29, 2016

DOI: http://dx.doi.org/10.5061/dryad.38nh3

 

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Title Female Phenotypes
Downloaded 5 times
Description This file contains all of the raw female phenotype data. The column names refer to the following: PopID = Population ID; ID = Individual ID; SVL = snout-vent length (mm); std.length = standard length (tip of snout to start of tail, mm); depth = body depth (measured at urogenital opening, mm); SnoutLength = snout length (tip of snout to eye, mm); SnoutDepth = snout depth (measured at midpoint of snout, mm); HeadLength = head length (tip of snout to start of gills, mm); MBandArea = mean band area (mm^2); BandNum = number of bands (count).
Download fem.pheno.txt (16.86 Kb)
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Title Male Phenotypes
Downloaded 7 times
Description This file contains all of the raw male phenotypic measurements. he column names refer to the following: PopID = Population ID; ID = Individual ID; SVL = snout-vent length (mm); std.length = standard length (tip of snout to start of tail, mm); depth = body depth (measured at urogenital opening, mm); SnoutLength = snout length (tip of snout to eye, mm); SnoutDepth = snout depth (measured at midpoint of snout, mm); HeadLength = head length (tip of snout to start of gills, mm)
Download mal.pheno.txt (13.94 Kb)
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Title Sample Location Coordinates
Downloaded 3 times
Description This file contains the latitude ("lat") and longitude ("lon") for each collection site ("site").
Download marine_coordinates_revised.csv (258 bytes)
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Title Draft Genome Assembly
Downloaded 9 times
Description This is the draft genome assembly file, courtesy of Clay Small and William Cresko.
Download allpaths_cms1.scaff.fa (304.0 Mb)
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Title PLINK map file for subset of SNPs
Downloaded 10 times
Description This file is the map file for the 1753 unlinked SNPs that are in Hardy Weinberg Equilibrium.
Download subset.map (33.54 Kb)
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Title PLINK ped file for subset of SNPs
Downloaded 6 times
Description This file is the map file for the 1753 unlinked SNPs that are in Hardy Weinberg Equilibrium.
Download subset.ped (3.693 Mb)
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Title Sample_information
Downloaded 9 times
Description This file contains the information linking the individuals to the raw sequence data. Each individual has a barcode and a plate ID. Barcodes are unique to each plate but repeated between plates. This file also contains the population of origin for each individual and the latitude/longitude for that population. This file contains data for additional populations not used in this study.
Download Flanagan_popgen_sampleinfo.txt (49.16 Kb)
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When using this data, please cite the original publication:

Flanagan SP, Rose E, Jones AG (2016) Population genomics reveals multiple drivers of population differentiation in a sex-role-reversed pipefish. Molecular Ecology 25(20): 5043-5072. http://dx.doi.org/10.1111/mec.13794

Additionally, please cite the Dryad data package:

Flanagan SP, Rose E, Jones AG (2016) Data from: Population genomics reveals multiple drivers of population differentiation in a sex-role-reversed pipefish. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.38nh3
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