Data from: Natural variation in preparation for nutrient depletion reveals a cost-benefit tradeoff

Wang J, Atolia E, Hua B, Savir Y, Escalante-Chong R, Springer M

Date Published: February 3, 2015

DOI: http://dx.doi.org/10.5061/dryad.39h5m

 

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Title Dataset 1
Downloaded 26 times
Description GROWTH CURVES (Figure 1, S1-3, S11A-B; Also used in figure 3, 4, 7C). Contains .csv files of raw OD600 readings from plate reader.
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Title Dataset 2
Downloaded 16 times
Description DIAUXIC GROWTH TIMECOURSE ON BC187 AND YJM978 (Figure 2, 5A-B, S4B-D, S5, S7C, S11C; Also used in figure 5C, S7B). Contains .fcs files of raw flow cytometry data and .csv files of sugar concentrations.
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Title Dataset 3
Downloaded 12 times
Description DIAUXIC GROWTH TIMECOURSE ON MULTIPLE STRAINS (Figure 3, S7A-B,D-F,I, S9A). Contains .fcs files of raw flow cytometry data.
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Title Dataset 4
Downloaded 4 times
Description MEDIUM SHIFT AND STEADY-STATE EXPRESSION (Figure 4, S6; Also used in figure S9A, S12). Contains .fcs files of raw flow cytometry data.
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Title Dataset 5
Downloaded 6 times
Description STEADY-STATE FITNESS OF BC187 AND YJM978 (Figure 5C, S12). Contains .fcs files of raw flow cytometry data.
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Title Dataset 6
Downloaded 8 times
Description SYNTHETIC INDUCTION (Figure 6). Contains .fcs files of raw flow cytometry data.
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Title Dataset 7
Downloaded 8 times
Description STEADY-STATE FITNESS OF MULTIPLE STRAINS (Figure 7, S14). Contains .fcs files of raw flow cytometry data.
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Title Datasets 8-10
Downloaded 11 times
Description Dataset 8. ABSOLUTE COUNTING CONTROL (Figure S4A). Contains .fcs files of raw flow cytometry data. Dataset 9. LONG TIMECOURSE INDUCTION (Figure S8, S9B). Contains .fcs files of raw flow cytometry data. Dataset 10. PRE-CONDITION EFFECT ON INDUCTION KINETICS (Figure S10). Contains .fcs files of raw flow cytometry data.
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Title Dataset 11
Downloaded 8 times
Description TIMELAPSE MICROSCOPY (Figure S13). Contains .tiff files of raw microscopy data.
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Title MATLAB analysis code
Downloaded 23 times
Description MATLAB scripts for reproducing the analysis and generating all the figures in the paper. Scripts are organized into subfolders according to which dataset they are meant to analyze. See README.txt for entire repository for details and usage instructions.
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When using this data, please cite the original publication:

Wang J, Atolia E, Hua B, Savir Y, Escalante-Chong R, Springer M (2015) Natural variation in preparation for nutrient depletion reveals a cost-benefit tradeoff. PLOS Biology 13(1): e1002041. http://dx.doi.org/10.1371/journal.pbio.1002041

Additionally, please cite the Dryad data package:

Wang J, Atolia E, Hua B, Savir Y, Escalante-Chong R, Springer M (2015) Data from: Natural variation in preparation for nutrient depletion reveals a cost-benefit tradeoff. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.39h5m
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