Data from: Adaptive evolution and segregating load contribute to the genomic landscape of divergence in two tree species connected by episodic gene flow

Christe C, Stölting KN, Paris M, Fraїsse C, Bierne N, Lexer C

Date Published: July 20, 2016

DOI: http://dx.doi.org/10.5061/dryad.3bc76

 

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Title it_s1_10_10_29808
Downloaded 13 times
Description Joint SFS between P. alba and P. tremula in Italy made with dadi from Pool-seq data, 24 individuals for each species downsampled to 10 diploid individuals, 29808 SNP
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Title RAD_it_s1
Downloaded 8 times
Description Joint SFS for 20 P. alba and24 P. tremula in Italy for RAD-seq data made with dadi, downsampled to 15 and 15 individuals for a total of 8876 SNPs.
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Title script_inference_anneal2_newton_mis_0
Downloaded 37 times
Description Script allowing to carry out demographic models comparisons using ∂a∂i on genomic data.
Download script_inference_anneal2_newton_mis_0.py (52.23 Kb)
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Title dadi_define_models
Downloaded 22 times
Description Definition of the different 38 models of divergence used in our inferences with ∂a∂i.
Download dadi_define_models.py (146.1 Kb)
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Title DoS
Downloaded 9 times
Description Direction of selection (DoS) script:
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When using this data, please cite the original publication:

Christe C, Stölting KN, Paris M, Fraїsse C, Bierne N, Lexer C (2017) Adaptive evolution and segregating load contribute to the genomic landscape of divergence in two tree species connected by episodic gene flow. Molecular Ecology 26(1): 59-76. http://dx.doi.org/10.1111/mec.13765

Additionally, please cite the Dryad data package:

Christe C, Stölting KN, Paris M, Fraїsse C, Bierne N, Lexer C (2016) Data from: Adaptive evolution and segregating load contribute to the genomic landscape of divergence in two tree species connected by episodic gene flow. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.3bc76
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