Data from: Succession and dynamics of Pristionchus nematodes and their microbiome during decomposition of Oryctes beetles on La Réunion Island

Meyer JM, Baskaran P, Quast C, Susoy V, Rödelsperger C, Glöckner FO, Sommer RJ

Date Published: March 7, 2017

DOI: http://dx.doi.org/10.5061/dryad.3c153

 

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Title microbiome
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Description The data contains tables in txt format with read counts for bacterial phyla (Phylum_level_readsCountTable.txt) and families (Family_level_readsCountTable.txt) in pooled samples from five different environments (nematodes, beetle gut, decaying beetle, native soil, and decaying beetle). Zero read counts (no reads mapping to a taxonomic group) has been replaced by a value of 1e-5 to facilitate downstream analysis, such as taking the logarithm. We pooled the reads of technical replicates into one single sample by adding up the read counts, including 1e-5 values. For this reason some entries are floating point values rather than integers. Tables contain detailed information about each sample such as environment, sequencing year, decaying status, species and beetle parts information for nematode gut samples.
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When using this data, please cite the original publication:

Meyer JM, Baskaran P, Quast C, Susoy V, Rödelsperger C, Glöckner FO, Sommer RJ (2017) Succession and dynamics of Pristionchus nematodes and their microbiome during decomposition of Oryctes borbonicus on La Réunion Island. Environmental Microbiology 19(4): 1476-1489. http://dx.doi.org/10.1111/1462-2920.13697

Additionally, please cite the Dryad data package:

Meyer JM, Baskaran P, Quast C, Susoy V, Rödelsperger C, Glöckner FO, Sommer RJ (2017) Data from: Succession and dynamics of Pristionchus nematodes and their microbiome during decomposition of Oryctes beetles on La Réunion Island. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.3c153
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