Data from: The evolution of energetic scaling across the vertebrate tree of life

Uyeda JC, Pennell MW, Miller ET, Maia R, McClain CR

Date Published: February 14, 2017

DOI: http://dx.doi.org/10.5061/dryad.3c6d2

 

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Title Cleaned White Dataset
Downloaded 7 times
Description Data from McKechnie & Wolf (2004) and White et al. (2006) matched to our complete phylogeny (857 species). Data columns include lnBMR (log standard metabolic rate from White et al. 2006 and McKechnie & Wolf 2004, temperature corrected using the Arrhenius equation to 293.15 K); lnMass (log mass in grams, from White et al. 2006 and McKechnie & Wolf 2004); lnMass2 (squared log mass in grams); lnGS (log genome size in c-values. From the animal genome size database) and endo (Indicator variable for endothermy, applied to birds and mammals).
Download vertData.csv (71.05 Kb)
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Title Cleaned vertebrate phylogeny
Downloaded 2 times
Description Phylogeny used in analyses of trait evolution. Produced by combining published megaphylogenies including birds (Jetz et al. 2012), squamates (Pyron and Burbrink 2014), amphibians (Pyron and Wiens 2011) and fish (Rabosky et al. 2013). Mammals were constructed using Bininda-Emonds et al. 2007, Meredith et al. 2011 and phylogenies from the OpenTree of life database (Hinchliff et al. 2015) using the pipeline described in the manuscript. Trees were connected using dates from the timetree of life (Hedges et al. 2006) for the 5 major clades.
Download vertTree.tre (35.22 Kb)
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Title Cleaned Kolokotrones dataset
Downloaded 1 time
Description Cleaned dataset from Kolokotrones et al. (2010) matched to our mammalian phylogeny. Columns are: lnBMR (log standard metabolic rate in mlO2h^-1 from Kolokotrones et al. 2010); lnMass (log body mass in grams from Kolokotrones et al. 2010); lnMass2 (squared log body mass in grams); TempK (body temperature^-1 in Kelvins^-1 from Kolokotrones et al. 2010, and the Pantheria database, Jones et al. 2009 when absent from Kolokotrones et al. 2010).
Download kolokotronesData.csv (52.44 Kb)
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Title Cleaned Kolokotrones phylogeny
Downloaded 1 time
Description Our mammal phylogeny produced using our OpenTree pipeline (described in the full vertebrate phylogeny and manuscript) matched to the Kolokotrones dataset.
Download kolokotronesTree.tre (25.98 Kb)
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When using this data, please cite the original publication:

Uyeda JC, Pennell MW, Miller ET, Maia R, McClain CR (2017) The evolution of energetic scaling across the vertebrate tree of life. The American Naturalist 190(2): 185-199. http://dx.doi.org/10.1086/692326

Additionally, please cite the Dryad data package:

Uyeda JC, Pennell MW, Miller ET, Maia R, McClain CR (2017) Data from: The evolution of energetic scaling across the vertebrate tree of life. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.3c6d2
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