Data from: A rapid and scalable method for multilocus species delimitation using Bayesian model comparison and rooted triplets

Fujisawa T, Aswad A, Barraclough TG

Date Published: April 5, 2016

DOI: http://dx.doi.org/10.5061/dryad.3cb25

 

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Title Supplementary figures
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Description Supplementary figures for Fujisawa et al. 2016
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Title Supplementary text S1
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Description Online appendix for Fujisawa et al. 2016. Supplementary text S1.
Download SupplementaryTextS1_rev160202.docx (131.8 Kb)
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Title Alignments of Bacillus
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Description Sequence alignments of seven house keeping genes of Bacillus isolates in Nexus format.
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Title Beast MCC trees of Bacillus
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Description Beast MCC trees of seven house keeping genes of Bacillus isolates
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Title Clonalframe consensus tree of Bacillus
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Description Clonalframe consensus tree build with seven house keeping genes of Bacillus isolates
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Title Three speices simulations
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Description Simulated gene trees for three species simulations. Twenty five loci are interleaved as line1-locus1, line2-locus2, ... line26-locus1, ...
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Title Ten species simulation (Simulation A&B)
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Description Simulated gene trees for ten species simulations. Forty loci are interleaved.
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Title Ten species simulation (simulation C)
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Description Gene trees reconstructed from simulated sequences. Forty loci are interleaved.
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Title tr2-delimitation bitbucket repository
Description A link to the bitbucket repository of tr2-delimitation. The revision number 133 is the version of tr2 used for the simulation and empirical studies in Fujisawa et al. 2016.
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When using this data, please cite the original publication:

Fujisawa T, Aswad A, Barraclough TG (2016) A rapid and scalable method for multilocus species delimitation using Bayesian model comparison and rooted triplets. Systematic Biology 65(5): 759-771. http://dx.doi.org/10.1093/sysbio/syw028

Additionally, please cite the Dryad data package:

Fujisawa T, Aswad A, Barraclough TG (2016) Data from: A rapid and scalable method for multilocus species delimitation using Bayesian model comparison and rooted triplets. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.3cb25
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