Data from: The acacia ants revisited: convergent evolution and biogeographic context in an iconic ant/plant mutualism

Ward PS, Branstetter MG

Date Published: March 23, 2017

DOI: http://dx.doi.org/10.5061/dryad.3d31q

 

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Title Complete set of aligned UCE contigs
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Description The file includes the complete set of 2448 aligned, untrimmed UCE contigs. The alignments are provided as individual files in FASTA format.
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Title Raw sequence reads (SRA PRJNA357470)
Description Raw illumina reads in FASTQ format for all samples sequenced in this study. Samples were enriched for ultra-conserved element loci.
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Title Concatenated matrix of aligned UCE loci
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Description The primary DNA sequence matrix analyzed in this study. The matrix contains 1672 aligned, filtered, and trimmed UCE loci. Includes by-locus character partitions.
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Title Data tables
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Description The complete set of data tables included in the main text and supplemental materials of this study. Provided in csv and xlsx formats.
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Title BEAST xml data files
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Description All BEAST xml data files used in this study. Includes one file for the 29 sample analysis, and two files for the 18 sample analyses (topologies 1 and 2).
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Title BioGeoBEARS analysis files
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Description BioGeoBEARS analysis files for all of the Pseudomyrmex and Vachellia biogeographic analyses.
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Title Tree files
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Description Main phylogenetic tree results provided in NEXUS and PDF formats. Includes best RAxML trees with bootstrap scores, ExaBayes consensus trees with posterior probabilities, ASTRAL species trees with bootstrap scores, and BEAST chronograms.
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Title Trait reconstruction analysis files
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Description R scripts and trait data for inferring habitat and nesting ancestral states.
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Title Partition files in RAxML format
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Description Partitioning schemes for by-locus, hcluster, and kmeans partitioned analyses. All files in RAxML-style format.
Download partitioning-files-raxml-format.zip (3.038 Mb)
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When using this data, please cite the original publication:

Ward PS, Branstetter MG (2017) The acacia ants revisited: convergent evolution and biogeographic context in an iconic ant/plant mutualism. Proceedings of the Royal Society B 284(1850): 20162569. http://dx.doi.org/10.1098/rspb.2016.2569

Additionally, please cite the Dryad data package:

Ward PS, Branstetter MG (2017) Data from: The acacia ants revisited: convergent evolution and biogeographic context in an iconic ant/plant mutualism. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.3d31q
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