Data from: De novo assembly and characterization of four anthozoan (phylum Cnidaria) transcriptomes

Kitchen SA, Crowder CM, Poole AZ, Weis VM, Meyer E

Date Published: September 21, 2015

DOI: http://dx.doi.org/10.5061/dryad.3f08f

 

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Title Anthopleura elegantissima de novo transcriptome assembly v1.0
Downloaded 25 times
Description An annotated de novo transcriptome assembly produced from a nominally aposymbiotic specimen of Anthopleura elegantissima collected from Seal Rock, OR, USA. Sequences were pre-processed to exclude low quality or uninformative reads, then assembled using Trinity. The raw data used to produce this assembly can be found at NCBI's SRA, accession number SRP063463. The assembly can be searched by gene name or functional terms using the following database: http://ib.oregonstate.edu/~meyere/DB/Aele/search.php.
Download Aele_transcriptome_v1.fasta.gz (42.68 Mb)
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Title Fungia scutaria de novo transcriptome assembly v1.0
Downloaded 12 times
Description An annotated de novo transcriptome assembly produced from aposymbiotic planula larvae of Fungia scutaria on Coconut Island, HI, USA. Sequences were pre-processed to exclude low quality or uninformative reads, then assembled using Trinity. The raw data used to produce this assembly can be found at NCBI's SRA, accession number SRP063463. The assembly can be searched by gene name or functional terms using the following database: http://ib.oregonstate.edu/~meyere/DB/Fscu/search.php.
Download Fscu_transcriptome_v1.fasta.gz (58.41 Mb)
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Title Montastraea cavernosa de novo transcriptome assembly v1.0
Downloaded 12 times
Description An annotated de novo transcriptome assembly produced from an adult specimen of Montastraea cavernosa collected from the Florida Keys, FL, USA. Sequences were pre-processed to exclude low quality or uninformative reads, then assembled using Trinity. The raw data used to produce this assembly can be found at NCBI's SRA, accession number SRP063463. The assembly can be searched by gene name or functional terms using the following database: http://ib.oregonstate.edu/~meyere/DB/Mcav/search.php.
Download Mcav_transcriptome_v1.fasta.gz (85.17 Mb)
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Title Seriatopora hystrix de novo transcriptome assembly v.10
Downloaded 18 times
Description An annotated de novo transcriptome assembly produced from an adult specimen of Seriatopora hystrix collected from Nanwan Bay, Taiwan. Sequences were pre-processed to exclude low quality or uninformative reads, then assembled using Trinity. The raw data used to produce this assembly can be found at NCBI's SRA, accession number SRP063463. The assembly can be searched by gene name or functional terms using the following database: http://ib.oregonstate.edu/~meyere/DB/Shys/search.php.
Download Shys_transcriptome_v1.fasta.gz (53.76 Mb)
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When using this data, please cite the original publication:

Kitchen SA, Crowder CM, Poole AZ, Weis VM, Meyer E (2015) De novo assembly and characterization of four anthozoan (phylum Cnidaria) transcriptomes. G3: Genes - Genomes - Genetics 5(11):2441-2452. http://dx.doi.org/10.1534/g3.115.020164

Additionally, please cite the Dryad data package:

Kitchen SA, Crowder CM, Poole AZ, Weis VM, Meyer E (2015) Data from: De novo assembly and characterization of four anthozoan (phylum Cnidaria) transcriptomes. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.3f08f
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