Data from: Genome architecture enables local adaptation of Atlantic cod despite high connectivity

Barth JMI, Berg PR, Jonsson PR, Bonanomi S, Corell H, Hemmer-Hansen J, Jakobsen KS, Johannesson K, Jorde PE, Knutsen H, Moksnes P, Star B, Stenseth NC, Svedäng H, Jentoft S, André C

Date Published: June 15, 2017

DOI: http://dx.doi.org/10.5061/dryad.3f1c8

 

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Title SNP array data including linked loci (7,783 SNPs)
Downloaded 14 times
Description SNP array data of 527 Atlantic cod (Gadus morhua), genotyped at 7,783 loci (dataset including linked SNPs). Genepop format (http://genepop.curtin.edu.au/help_input.html): first line: datafile information; second line: loci names (dbSNP accession numbers); line 3-543 genotypes for each locus (01=A, 02=C, 03=G, 04=T), one individual per row, sampling sites are separated by “pop”. All SNPs are referred to by their database of Single Nucleotide Polymorphisms (dbSNP) accession numbers, available from: http://www.ncbi.nlm.nih.gov/SNP. First three characters of individual names correspond to population IDs: ENG, English Channel; NOR, North Sea; TVE, Tvedestrand; SOP, Soppekilen; HEL, Hellefjord; FRI/GRE, Grenland; OSL, Oslofjord; IDD, Iddefjord; SKA, Skagerrak; GUL, Gullmarsfjord; HAV, Havstensfjord; KAT, Kattegat; ORE, Öresund; BEL, Belt Sea.
Download barth_atlantic_cod_7783_SNPs.txt (20.62 Mb)
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Title SNP array data excluding linked loci (6,658 SNPs)
Downloaded 8 times
Description SNP array data of 527 Atlantic cod (Gadus morhua), genotyped at 6,658 loci (dataset excluding linked SNPs). Genepop format (http://genepop.curtin.edu.au/help_input.html): first line: datafile information; second line: loci names (dbSNP accession numbers); line 3-543 genotypes for each locus (01=A, 02=C, 03=G, 04=T), one individual per row, sampling sites are separated by “pop”. All SNPs are referred to by their database of Single Nucleotide Polymorphisms (dbSNP) accession numbers, available from: http://www.ncbi.nlm.nih.gov/SNP. First three characters of individual names correspond to population IDs: ENG, English Channel; NOR, North Sea; TVE, Tvedestrand; SOP, Soppekilen; HEL, Hellefjord; FRI/GRE, Grenland; OSL, Oslofjord; IDD, Iddefjord; SKA, Skagerrak; GUL, Gullmarsfjord; HAV, Havstensfjord; KAT, Kattegat; ORE, Öresund; BEL, Belt Sea.
Download barth_atlantic_cod_6658_SNPs.txt (17.64 Mb)
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When using this data, please cite the original publication:

Barth JM, Berg PR, Jonsson PR, Bonanomi S, Corell H, Hemmer-Hansen J, Jakobsen KS, Johannesson K, Jorde PE, Knutsen H, Moksnes P, Star B, Stenseth NC, Svedäng H, Jentoft S, André C (2017) Genome architecture enables local adaptation of Atlantic cod despite high connectivity. Molecular Ecology, online in advance of print. http://dx.doi.org/10.1111/mec.14207

Additionally, please cite the Dryad data package:

Barth JMI, Berg PR, Jonsson PR, Bonanomi S, Corell H, Hemmer-Hansen J, Jakobsen KS, Johannesson K, Jorde PE, Knutsen H, Moksnes P, Star B, Stenseth NC, Svedäng H, Jentoft S, André C (2017) Data from: Genome architecture enables local adaptation of Atlantic cod despite high connectivity. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.3f1c8
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