Data from: Mitochondrial DNA variants help monitor the dynamics of Wolbachia invasion into host populations

Yeap HL, Rašić G, Endersby-Harshman NM, Lee SF, Arguni E, Nguyen HL, Hoffmann AA

Date Published: October 1, 2015

DOI: http://dx.doi.org/10.5061/dryad.3f355

 

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Title RADseq_Loci_in_all_individuals
Downloaded 9 times
Description Sequences and hamming distance from assembled mitochondrial sequences in RAD sequencing
Download RADseq_Loci_in_all_individuals.xlsx (865.5 Kb)
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Title Nucleotide alignment_CO1
Downloaded 10 times
Description Fasta file of partial sequences. Description of samples can be obtained from Excel spreadsheet provided. See Column G of "Sample_details_updated.xlsx".
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Title Nucleotide alignment_ND4
Downloaded 7 times
Description Partial ND4 sequences. Labels match column B of "Sample_details_updated.xlsx". See comments in cell H1 for explanation of sequences labelled "...Assembly..."
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Title Nucleotide alignment_ND5
Downloaded 4 times
Description Partial ND5 sequences. See column F of "Sample_details_updated.xlsx" to trace back actual sample details.
Download Nucleotide alignment_ND5.fasta (77.01 Kb)
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Title Primer1
Downloaded 2 times
Description Sequence from region amplified by primer pair 1 (see Behura et al. 2011). Labels match column B of "Sample_details_updated.xlsx". See comments in cell H1 for explanation of sequences labelled "...Assembly..."
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Title Primer4
Downloaded 10 times
Description Sequence from region amplified by primer pair 4 (see Behura et al. 2011). Labels match column B of "Sample_details_updated.xlsx". See comments in cell H1 for explanation of sequences labelled "...Assembly..."
Download Primer4.fasta (125.0 Kb)
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Title Primer6
Downloaded 3 times
Description Sequence from region amplified by primer pair 6 (see Behura et al. 2011). Labels match column B of "Sample_details_updated.xlsx". See comments in cell H1 for explanation of sequences labelled "...Assembly..."
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Title R-script
Downloaded 4 times
Description R codes for models
Download R-script.doc (154.1 Kb)
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Title Sample_details
Downloaded 8 times
Description (relevant columns for ID). Column B lists all ID of samples that were considered, but not all were sequenced. Column F lists the labels in the ND5 fasta file. Column G lists the labels in the COI fasta file.
Download Sample_details_updated.xlsx (35.90 Kb)
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When using this data, please cite the original publication:

Yeap HL, Rašić G, Endersby-Harshman NM, Lee SF, Arguni E, Nguyen HL, Hoffmann AA (2015) Mitochondrial DNA variants help monitor the dynamics of Wolbachia invasion into host populations. Heredity 116: 265–276. http://dx.doi.org/10.1038/hdy.2015.97

Additionally, please cite the Dryad data package:

Yeap HL, Rašić G, Endersby-Harshman NM, Lee SF, Arguni E, Nguyen HL, Hoffmann AA (2015) Data from: Mitochondrial DNA variants help monitor the dynamics of Wolbachia invasion into host populations. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.3f355
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