Data from: De novo transcriptome characterization of a sterilizing trematode parasite (Microphallus sp.) from two species of New Zealand snails

Bankers L, Neiman M

Date Published: February 7, 2017

DOI: http://dx.doi.org/10.5061/dryad.3ft30

 

Files in this package

Content in the Dryad Digital Repository is offered "as is." By downloading files, you agree to the Dryad Terms of Service. To the extent possible under law, the authors have waived all copyright and related or neighboring rights to this data. CC0 (opens a new window) Open Data (opens a new window)

Title Fst_per_SNP_data
Downloaded 10 times
Description Fst per SNP between PA-Microphallus and PE-Microphallus 1) with both sets of reads mapped to the PA-Microphallus set of orthologous transcripts, and 2)with both sets of reads mapped to the PE-Microphallus set of orthologous transcripts.
Download Fst_per_SNP_data.xlsx (1.234 Mb)
Details View File Details
Title Theta_per_transcript_data
Downloaded 8 times
Description We used Popoolation to estimate Watterson's theta for each transcript in our set of orthologous transcript for 1) PA-Microphallus, and 2) PE-Microphallus.
Download Theta_per_transcript_data.xlsx (711.7 Kb)
Details View File Details
Title Pairwise_distance_data
Downloaded 11 times
Description We used Clustal Omega to pairs of orthologous transcripts and calculate Jukes-Cantor-corrected pairwise molecular distance between PA-Microphallus and PE-Microphallus
Download Pairwise_distance_data.xlsx (439.2 Kb)
Details View File Details
Title Microsatellites_and_primer_data
Downloaded 6 times
Description We used MISA and Primer3 to identify potential microsatellite loci and predict primer sequences for amplification from our set of orthologous transcripts for both PA-Microphallus and PE-Microphallus. This file contains the locus and primer information (Tables S8 and S9 in manuscript).
Download Microsatellites_and_primer_data.xlsx (102.8 Kb)
Details View File Details
Title PE-Microphallus_annotated_transcriptome
Downloaded 7 times
Description Fasta formatted annotated transcriptome for PE-Microphallus The assembly was generated using Trinity, followed by TransDecoder, then CD-HIT-EST. The transcriptome was annotated using blastx and Blast2GO.
Download PE-Microphallus_annotated_transcriptome.fasta (30.77 Mb)
Details View File Details
Title PA-Microphallus_annotated_transcriptome
Downloaded 11 times
Description Fasta formatted annotated transcriptome for PA-Microphallus The assembly was generated using Trinity, followed by TransDecoder, then CD-HIT-EST. The transcriptome was annotated using blastx and Blast2GO.
Download PA-Microphallus_annotated_transcriptome.fasta (19.86 Mb)
Details View File Details

When using this data, please cite the original publication:

Bankers L, Neiman M (2017) De novo transcriptome characterization of a sterilizing trematode parasite (Microphallus sp.) from two species of New Zealand snails. G3: Genes - Genomes - Genetics 7(3): 871-880. http://dx.doi.org/10.1534/g3.116.037275

Additionally, please cite the Dryad data package:

Bankers L, Neiman M (2017) Data from: De novo transcriptome characterization of a sterilizing trematode parasite (Microphallus sp.) from two species of New Zealand snails. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.3ft30
Cite | Share
Download the data package citation in the following formats:
   RIS (compatible with EndNote, Reference Manager, ProCite, RefWorks)
   BibTex (compatible with BibDesk, LaTeX)

Search for data

Be part of Dryad

We encourage organizations to: