Data from: Genomic variation in a widespread Neotropical bird (Xenops minutus) reveals divergence, population expansion, and gene flow

Harvey MG, Brumfield RT

Date Published: November 19, 2014

DOI: http://dx.doi.org/10.5061/dryad.3j0b1

 

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Title Xenops_UNEAK_genotype_file
Downloaded 29 times
Description Raw output from the UNEAK pipeline
Download Xenops_UNEAK_genotype_file.txt (1.668 Mb)
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Title Xenops_alignment_of_concatenated_SNPs
Downloaded 19 times
Description Alignment of concatenated SNPs after re-calling genotypes using Tom White's scripts (https://github.com/mgharvey/GBS_process_Tom_White). IUPAC ambiguity codes are used for heterozygous individuals.
Download Xenops_alignment_of_concatenated_SNPs.nex (243.8 Kb)
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Title Xenops_pairwise_geographic_distance_matrix
Downloaded 10 times
Description Geographic distance matrix from SPAGeDi.
Download Xenops_pairwise_geographic_distance_matrix.txt (46.44 Kb)
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When using this data, please cite the original publication:

Harvey MG, Brumfield RT (2015) Genomic variation in a widespread Neotropical bird (Xenops minutus) reveals divergence, population expansion, and gene flow. Molecular Phylogenetics and Evolution 83: 305-316. http://dx.doi.org/10.1016/j.ympev.2014.10.023

Additionally, please cite the Dryad data package:

Harvey MG, Brumfield RT (2014) Data from: Genomic variation in a widespread Neotropical bird (Xenops minutus) reveals divergence, population expansion, and gene flow. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.3j0b1
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