Data from: Generation time, net reproductive rate, and growth in stage-age structured populations

Steiner UK, Tuljapurkar S, Coulson T

Date Published: June 16, 2014

DOI: http://dx.doi.org/10.5061/dryad.3m5fc

 

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Title Killer Whale example code and matrix
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Description Matlab code for the killer whale example including stage structured transition matrix. Initial data published by Caswell (2001) based on Brault & Caswell (1993)
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Title Killer Whale example output
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Description Output from the matlab code for the killer whale example.
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Title Matlab code for two patch model run first
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Description This generates the matrices and information that is later used in the patches-analysis.m file. So run this file first.
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Title Matlab code two patch example run second
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Description Matlab code for the two patch model that estimating the data used in Fig. 3 of the article
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Title Matlab output file for two patch model
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Description This is the Matlab output generated from the patches_analysis file
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Title Matlab code for two age class four size class example: matices
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Description Matlab code that generates the data for the two age class four size class model. It generates an output file called small_neutral
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Title Matlab output file small_neutral
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Description Matlab output file for two stage four age class model: small_neutral output file. Generated from small_neutral.m file
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Title Matlab code two age four stage class example run second
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Description Matlab code for the two age four stage class example that generates the data for Fig. 3
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Title Matlab output two age four stage class example
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Description Matlab output for the two age class four stage class example generated by comp_smallmats.m file
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Title Matlab function for two age four stage class model 1
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Description Matlab function that is called by the small_neutral.m file and comp_smallmats.m file
Download makesmallmats.m (1.503 Kb)
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Title Matlab function for two age four stage class model
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Description A matlab function that is called by small_neutral.m and comp_smallmats.m file for the two age and four stage class example.
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Title Matlab code for generating Fig. 2-4
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Description Matlab code for generating Fig. 2-4 using Output files: killer_out, patches1_out, small_neutral, and smallouts
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Title Soay Sheep IPM matrices used for Appendix
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Description Data base that has been used for the Soay Sheep example including the matrices (Age-stage structured with dimensions of 900x900).
Download base_June_2012.mat (2.679 Mb)
Download base_June_2012.mat (2.679 Mb)
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When using this data, please cite the original publication:

Steiner UK, Tuljapurkar S, Coulson T (2014) Generation time, net reproductive rate, and growth in stage-age structured populations. The American Naturalist 183(6): 771-783. http://dx.doi.org/10.1086/675894

Additionally, please cite the Dryad data package:

Steiner UK, Tuljapurkar S, Coulson T (2014) Data from: Generation time, net reproductive rate, and growth in stage-age structured populations. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.3m5fc
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