Data from: Not all are free-living: high-throughput DNA metabarcoding reveals a diverse community of protists parasitizing soil metazoa

Geisen S, Laros I, Vizcaíno A, Bonkowski M, de Groot GA

Date Published: May 12, 2015

DOI: http://dx.doi.org/10.5061/dryad.3m680

 

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Title OTU representative sequences
Downloaded 5 times
Description Representative sequences for all OTUs for the forward (Euk20F) and Reverse (Euk302r) sequencing directions
Download OTUtableall.fa (48.49 Kb)
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Title Bioinformatic scripts
Downloaded 13 times
Description Full scripts for bioinformatic pipeline as applied for sequence data analysis for Geisen et al. 2015 Mol. Ecology
Download Scripts_Ecofinders_faunalbarcoding_run1_Pr....docx (14.81 Kb)
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Title Amoebozoa alignment
Downloaded 5 times
Description Allignment of 18S sequences (NEXUS-file), as used for phylogenetic analysis on Amoebazoa, as presented in Fig.3 of Geisen et al. 2015, Mol Ecology. Allignment includes OTUs recovered in this study, as well as sequences associated with those OTUs (downloaded from NCBI).
Download Amoebozoa alignment.nxs (8.539 Kb)
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When using this data, please cite the original publication:

Geisen S, Laros I, Vizcaíno A, Bonkowski M, de Groot GA (2015) Not all are free-living: high-throughput DNA metabarcoding reveals a diverse community of protists parasitizing soil metazoa. Molecular Ecology 24(17): 4556–4569. http://dx.doi.org/10.1111/mec.13238

Additionally, please cite the Dryad data package:

Geisen S, Laros I, Vizcaíno A, Bonkowski M, de Groot GA (2015) Data from: Not all are free-living: high-throughput DNA metabarcoding reveals a diverse community of protists parasitizing soil metazoa. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.3m680
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