Data from: Concatenation and concordance in the reconstruction of mouse lemur phylogeny: an empirical demonstration of the effect of allele sampling in phylogenetics.

 

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Title Individual Gene Trees
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Description Bayesian majority-rule consensus trees reconstructed for the 12 individual nuclear loci and the concatenated mitochondrial loci. Trees are presented as phylograms with branch lengths representing the average number of substitutions per site. Numbers on branches represent posterior probabilities.
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Title Individual Gene Alignments
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Description A compressed file containing the 12 nuclear and one mitochondrial data sets. Each gene is aligned as used in the original study and is presented in NEXUS format.
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Title Pruning example
Downloaded 53 times
Description This is the R script used to prune alleles from the sequence data sets and the corresponding tips in the posterior distribution of trees. Example files for one gene are included along with a "Read me" file with a few more snippets of information.
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When using this data, please cite the original publication:

Weisrock DW, Smith SD, Chan LM, Biebouw K, Kappeler PM, Yoder AD (2012) Concatenation and concordance in the reconstruction of mouse lemur phylogeny: an empirical demonstration of the effect of allele sampling in phylogenetics. Molecular Biology and Evolution 29(6): 1615-1630. http://dx.doi.org/10.1093/molbev/mss008

Additionally, please cite the Dryad data package:

Weisrock DW, Smith SD, Chan LM, Biebouw K, Kappeler PM, Yoder AD (2012) Data from: Concatenation and concordance in the reconstruction of mouse lemur phylogeny: an empirical demonstration of the effect of allele sampling in phylogenetics. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.3mt58823
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