Data from: Divergent immunity and energetic programs in the gills of migratory and resident Oncorhynchus mykiss

Sutherland BJ, Hanson KC, Jantzen JR, Koop BF, Smith CT

Date Published: March 6, 2014

DOI: http://dx.doi.org/10.5061/dryad.3p545

 

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Title photos
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Description Archive of photographs of each individual fish in *.jpg format. Fish identification numbers correspond to Table S1.
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Title Table S1. Sample information
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Description Length, weight, smoltscale, sex and NKA activity for every fish sampled. Individuals included in the microarray analysis and incorporated into the microarray reference pool are identified. Numbers assigned to each sample during RNA purification, and names used for each sample in the Gene Expression Omnibus accession are also listed.
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Title Table S2. Primer table.
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Description qPCR targets, primers, amplicon sizes (bases) and efficiency percentages from Oncorhynchus mykiss standard curve.
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Title Table S3. Gene Ontology enrichment in migrants or residents.
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Description Trimmed GO enrichment for the day eight migrant compared to resident gene lists (GO Trimming performed with an 0.80 soft trim threshold). BP = Biological Process; CC = Cellular Component; MF = Molecular Function.
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Title Additional File 1. Total differential gene lists.
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Description Total differential gene lists for day 8 migrant compared to resident, pre-release smoltscale 3 compared to smoltscale 2, and resident day 48 compared to resident day 8.
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Title Figure S1. Correlation between qPCR and microarray.
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Description (a) R2 and slope for each gene measured by microarray and qPCR (i.e., log2(qPCR) against log2(microarray)), and two example correlation plots (b) s100a4 and (c) irf1.
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Title resub_readme2
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Description Readme file associated with all files in this package.
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When using this data, please cite the original publication:

Sutherland BJ, Hanson KC, Jantzen JR, Koop BF, Smith CT (2014) Divergent immunity and energetic programs in the gills of migratory and resident Oncorhynchus mykiss. Molecular Ecology 23(8): 1952-1964. http://dx.doi.org/10.1111/mec.12713

Additionally, please cite the Dryad data package:

Sutherland BJ, Hanson KC, Jantzen JR, Koop BF, Smith CT (2014) Data from: Divergent immunity and energetic programs in the gills of migratory and resident Oncorhynchus mykiss. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.3p545
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