Data from: Characterization of Pythium spp. associated with asymptomatic soybeans in southeastern Pennsylvania

Coffua LS, Veterano ST, Clipman SJ, Mena-Ali JI, Blair JE

Date Published: May 4, 2016

DOI: http://dx.doi.org/10.5061/dryad.3s4d3

 

Files in this package

Content in the Dryad Digital Repository is offered "as is." By downloading files, you agree to the Dryad Terms of Service. To the extent possible under law, the authors have waived all copyright and related or neighboring rights to this data. CC0 (opens a new window) Open Data (opens a new window)

Title COI alignment
Downloaded 4 times
Description COI alignment file in Nexus format. NCBI block included after data block, which gives organism and isolation information for each sequence (as submitted to GenBank).
Download C12Cox1_Data.nexus (184.2 Kb)
Details View File Details
Title COI alignment MEGA format
Downloaded 4 times
Description COI alignment formatted for analysis in MEGA. Missing data coded as '?'
Download C12Cox1_Data.meg (125.9 Kb)
Details View File Details
Title COI Neighbor-joining Tree
Downloaded 2 times
Description Newick format tree file from neighbor-joining analysis in MEGA (Kimura 2-Parameter model, pairwise deletion of gaps/missing data).
Download C12_NJ_K2P_pairwisedeletion.nwk (5.579 Kb)
Details View File Details
Title COI Neighbor-joining Tree with Species Labels
Downloaded 26 times
Description PDF file of tree from neighbor-joining analysis with species (or aff) designations labeled.
Download SpeciesLabeled.pdf (39.98 Kb)
Details View File Details
Title COI alignment with Reference Sequences in MEGA format
Downloaded 5 times
Description Pythium (and select other oomycetes) included with COI sequences generated here. Sequences were obtained from NCBI.
Download Cox1_C12plusRefs.meg (262.2 Kb)
Details View File Details
Title COI Neighbor-joining Tree with Reference Sequences
Downloaded 44 times
Description PDF of neighbor-joining tree from alignment with Pythium and other oomycete reference sequences included.
Download Cox1NJtree_C12plusRefs.pdf (79.96 Kb)
Details View File Details

When using this data, please cite the original publication:

Coffua LS, Veterano ST, Clipman SJ, Mena-Ali JI, Blair JE (2016) Characterization of Pythium spp. associated with asymptomatic soybeans in southeastern Pennsylvania. Plant Disease 100(9): 1870-1879. http://dx.doi.org/10.1094/PDIS-11-15-1355-RE

Additionally, please cite the Dryad data package:

Coffua LS, Veterano ST, Clipman SJ, Mena-Ali JI, Blair JE (2016) Data from: Characterization of Pythium spp. associated with asymptomatic soybeans in southeastern Pennsylvania. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.3s4d3
Cite | Share
Download the data package citation in the following formats:
   RIS (compatible with EndNote, Reference Manager, ProCite, RefWorks)
   BibTex (compatible with BibDesk, LaTeX)

Search for data

Be part of Dryad

We encourage organizations to: