Data from: Patterns of linkage disequilibrium and long range hitchhiking in evolving experimental Drosophila melanogaster populations

Franssen SU, Nolte V, Tobler R, Schlötterer C

Date Published: January 5, 2015

DOI: http://dx.doi.org/10.5061/dryad.403b2

 

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Title Scripts
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Description This zip archive includes two python scripts referenced in the associated publication. Functionality includes: 1) Estimation of short and long range LD from haplotype data, 2) Identification of haplotype-blocks through singleton markers. Each script comes with an associated README file, parameter specifications and example data. See Material and Methods and a description in the Supplemental Material for more details.
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Title Dmel_haplotype_fasta_base
Downloaded 31 times
Description This zip archive contains fasta files of 29 haploid D. melanogaster genomes associated with the experimental evolution experiment in the referenced publication. They correspond to 29 haploid genomes for the experimental starting population. Provided are the major chromosomal arms X, 2L, 2R, 3L and 3R. See Material and Methods for more details.
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Title Dmel_haplotype_fasta_F67
Downloaded 32 times
Description This zip archive contains fasta files of 29 haploid D. melanogaster genomes associated with the experimental evolution experiment in the referenced publication. They correspond to 29 haploid genomes for a (hot) evolved population at generation 67 (2nd replicate). Provided are the major chromosomal arms X, 2L, 2R, 3L and 3R. See Material and Methods for more details.
Download Dmel_haplotype_fasta_F67.zip (926.0 Mb)
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When using this data, please cite the original publication:

Franssen SU, Nolte V, Tobler R, Schlötterer C (2015) Patterns of linkage disequilibrium and long range hitchhiking in evolving experimental Drosophila melanogaster populations. Molecular Biology and Evolution 32(2): 495-509. http://dx.doi.org/10.1093/molbev/msu320

Additionally, please cite the Dryad data package:

Franssen SU, Nolte V, Tobler R, Schlötterer C (2014) Data from: Patterns of linkage disequilibrium and long range hitchhiking in evolving experimental Drosophila melanogaster populations. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.403b2
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