Data from: "Identification of SNP markers for the endangered Ugandan red colobus (Procolobus rufomitratus tephrosceles) using RAD sequencing" in Genomic Resources Notes accepted 1 December 2014 to 31 January 2015

Ruiz Lopez MJ, Goldberg TL, Chapman CA, Omeja PA, Jones JH, Switzer WM, Etter PD, Johnson EA, Ting N

Date Published: February 9, 2015

DOI: http://dx.doi.org/10.5061/dryad.404fh

 

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Title SNP information for loci identified using Restriction-site-associated DNA sequencing in the Ugandan red colobus
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Description The file contains the SNP information for the loci identified using Restriction-site-associated DNA sequencing in the Ugandan red colobus. The text contains the following information: Locus (number assign to the locus by the program STACKS); Position (position of the SNP); SNP (identifies the change of the base in the SNP position); Consensus sequence (consensus sequence for the locus); number of individuals (number of individuals where the locus has been genotyped). It also includes the genotypes for all the individuals. If the individual could not be genotyped a "-" will appear. Some loci present more than one SNP, in those cases, the SNP information will appear in consecutive rows. For example locus 4 has SNPs in positions 86 (row number 2 in the table) and 89 (row number 3 in the table). In those cases the genotypes for the individuals always show the complete genotype. Heterozygotes are indicated with a "/". For example A/G is heterozygote for 1 SNP, CA/GG is heterozygote for 2 SNPs, GA/GG is heterozygote for 1 SNP out of 2.
Download RedcolobuslociSNPinformation.xlsx (13.02 Mb)
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When using this data, please cite the original publication:

Genomic Resources Development Consortium, Blanchet S, Bouchez O, Chapman CA, Etter PD, Goldberg TL, Johnson EA, Jones JH, Loot G, Omeja PA, Rey O, Ruiz-Lopez MJ, Switzer WM, Ting N (2015) Genomic Resources Notes accepted 1 December 2014 to 31 January 2015. Molecular Ecology Resources 15(3): 684. http://dx.doi.org/10.1111/1755-0998.12388

Additionally, please cite the Dryad data package:

Ruiz Lopez MJ, Goldberg TL, Chapman CA, Omeja PA, Jones JH, Switzer WM, Etter PD, Johnson EA, Ting N (2015) Data from: "Identification of SNP markers for the endangered Ugandan red colobus (Procolobus rufomitratus tephrosceles) using RAD sequencing" in Genomic Resources Notes accepted 1 December 2014 to 31 January 2015. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.404fh
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