Data from: Dramatic niche shifts and morphological change in two insular bird species

Alström P, Fjeldså J, Jønsson KA, Ödeen A, Ericson PGP, Irestedt M

Date Published: February 10, 2015

DOI: http://dx.doi.org/10.5061/dryad.40s3g

 

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Title Supplementary Table S1
Downloaded 19 times
Description List of samples, with GenBank accession numbers
Download Table S1 Madanga Samples.xls (50.17 Kb)
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Title RSOS-140364 contents and captions ESMs
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Description Contents and captions to data files.
Download RSOS-140364 contents and captions ESMs.pdf (123.5 Kb)
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Title Supplementary Table S2
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Description Measurements of Madanga ruficollis and the other species in clade A in Fig. 1.
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Title Table S3 PCA Madanga
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Description Output from PCA of morphological characters.
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Title Fig. S1. MB Madanga Passeriformes AllLoci 4parts
Downloaded 13 times
Description Relationships of broad selection of Passeriformes, including Madanga ruficollis and Amaurocichla bocagii, based on concatenated ND2, ODC, myo and CHD1Z, analysed by Bayesian inferenece, partitioned by locus.
Download Fig. S1. MB Madanga Passeriformes AllLoci...ts.pdf (149.0 Kb)
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Title PassMadangaAllLoci
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Description Alignment and settings for analysis shown in Fig. S1.
Download PassMadangaAllLoci.nex (149.2 Kb)
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Title Fig. S2. MB Madanga All Loci 7parts
Downloaded 13 times
Description Bayesian inference tree of Madanga ruficollis, Amaurocichla bocagii and representatives of all clades of Anthus and Motacilla found in previous studies, including all “small pipits” (except A. petrosus, which was previously considered conspecific with A. spinoletta). Based on mitochondrial cytb and ND2, and nuclear ODC, myo and CHD1Z sequence data analysed in seven partitions (by locus and codon; see MadangaAllLoci.nxs).
Download Fig. S2. MB Madanga All Loci 7parts.pdf (191.7 Kb)
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Title MadangaAllLoci
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Description Alignment and settings for analysis shown in Fig. S2.
Download MadangaAllLoci.nxs (155.8 Kb)
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Title Fig. S3. MB single-locus analyses
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Description Single-locus analyses of the same taxa as in Supplementary Figure S2.
Download Fig. S3. MB single-locus analyses.pdf (503.9 Kb)
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Title Fig. S4. BEAST Madanga Cytb
Downloaded 21 times
Description Chronogram for the same taxa as in Supplementary Figures 2 and 3, based on cytb sequences and a relaxed molecular clock (2.1% / million years), inferred by Bayesian inference, with 95% highest posterior density intervals for the node ages.
Download Fig. S4. BEAST Madanga Cytb ShortInkAspr ...1%.pdf (186.6 Kb)
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Title MadaCytbShort
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Description Xml file for analysis in Fig. S4.
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Title Photos AMNH
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Description Photos of Madanga ruficollis and Amaurocichla bocagii from the American Museum of Natural History, including x-rays of Madanga ruficollis.
Download Photos AMNH.zip (99.19 Mb)
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When using this data, please cite the original publication:

Alström P, Jønsson KA, Fjeldså J, Ödeen A, Ericson PGP, Irestedt M (2015) Dramatic niche shifts and morphological change in two insular bird species. Royal Society Open Science 2(3): 140364. http://dx.doi.org/10.1098/rsos.140364

Additionally, please cite the Dryad data package:

Alström P, Fjeldså J, Jønsson KA, Ödeen A, Ericson PGP, Irestedt M (2015) Data from: Dramatic niche shifts and morphological change in two insular bird species. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.40s3g
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