Data from: Environmental monitoring through protist NGS metabarcoding: assessing the impact of fish farming on benthic foraminifera communities

Pawlowski J, Esling P, Lejzerowicz F, Cedhagen T, Wilding T

Date Published: April 7, 2014

DOI: http://dx.doi.org/10.5061/dryad.4108h

 

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Title SFA114_OBAN_ISUs
Downloaded 15 times
Description The file is a fasta file containing the individual sequence units (ISUs) obtained after the stringent quality filtering, assembly, demultiplexing and dereplication steps described in the paper. The paired-end reads from large forward and reverse fastq files were treated using a custom C language program. The 5 fields of each underscore-separated ISU header represent from the first to the last field: the project alphanumeric ID ('SFA114'), the project name ('OBAN'), the type of molecule ('DNA' of 'RNA'), the sample ID number ('1' - '45') and the number of reads of the ISU.
Download SFA114_OBAN_ISUs.tar (11.70 Mb)
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Title normalized_OTUs_reads
Downloaded 40 times
Description For each OTU (lines) are indicated the number of reads found in each sample (columns). The taxonomic assignment of each OTU is indicated in the first column. The sample names are indicated in the first line.
Download normalized_OTUs_reads.xls (418.3 Kb)
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Title Morphological_counts
Downloaded 41 times
Description Number of foraminifera morphospecies counted in the 45 sequenced sediment samples. For each species identifed based on morphological characters (lines), the counts are detailed for each sample (column in spreadsheet "Species") or summed across samples (spreadsheet "final counts").
Download Morphological_counts.xls (67.07 Kb)
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When using this data, please cite the original publication:

Pawlowski J, Esling P, Lejzerowicz F, Cedhagen T, Wilding T (2014) Environmental monitoring through protist NGS metabarcoding: assessing the impact of fish farming on benthic foraminifera communities. Molecular Ecology Resources 14(6): 1129-1140. http://dx.doi.org/10.1111/1755-0998.12261

Additionally, please cite the Dryad data package:

Pawlowski J, Esling P, Lejzerowicz F, Cedhagen T, Wilding T (2014) Data from: Environmental monitoring through protist NGS metabarcoding: assessing the impact of fish farming on benthic foraminifera communities. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.4108h
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