Data from: A multilocus molecular phylogeny for the avian genus Liocichla (Passeriformes: Leiothrichidae: Liocichla)

Mays HL, McKay BD, Tietze DT, Yao C, Miller LN, Moreland KN, Lei F

Date Published: August 5, 2015

DOI: http://dx.doi.org/10.5061/dryad.413f4

 

Files in this package

Content in the Dryad Digital Repository is offered "as is." By downloading files, you agree to the Dryad Terms of Service. To the extent possible under law, the authors have waived all copyright and related or neighboring rights to this data. CC0 (opens a new window) Open Data (opens a new window)

Title Nexus alignments including all taxa
Downloaded 44 times
Description Nexus alignments that include all taxa even those taxa (Minla ignotincta and Liocichla bugunorum) for which there are missing sequences for some loci.
Download Nexus alignments ALL TAXA.zip (8.294 Kb)
Details View File Details
Title Nexus alignments without MI and LB
Downloaded 31 times
Description Nexus alignments used in BEAST in which taxa with missing data for one or more loci (Minla ignotincta and Liocichla bugunorum) were excluded.
Download Nexus alignments without MI and LB.zip (9.369 Kb)
Details View File Details
Title BEAST23_run1_analysis23
Downloaded 9 times
Description BEAUti xml file for analysis with partitioning only by locus.
Download BEAST23_run1_analysis23.xml (171.0 Kb)
Details View File Details
Title BEAST23_run1_analysis24
Downloaded 6 times
Description BEAUti xml file with partitioning by both locus and codon position
Download BEAST23_run1_analysis24.xml (233.5 Kb)
Details View File Details
Title Combined results from BEAST codon partitioned analysis
Downloaded 27 times
Description log and tree files from four replicate BEAST runs using partitioning by both codon and locus combined in LogCombiner
Download Combined results from BEAST codon partiti...is.zip (70.02 Mb)
Details View File Details
Title Combined results from BEAST gene only partitioned analysis
Downloaded 31 times
Description log and tree files from four replicate BEAST runs using only partitioning by locus combined in LogCombiner
Download Combined results from BEAST gene only par...is.zip (47.19 Mb)
Details View File Details
Title BEAST analysis with gene partitioning and nuclear loci only
Downloaded 24 times
Description log and tree files from single run of BEAST (100,000,000 generations) with partitioning by gene and only the nuclear intron loci.
Download BEAST analysis with gene partitioning and...ly.zip (10.05 Mb)
Details View File Details
Title Supplemental file 1 GenBank accession numbers
Downloaded 23 times
Description GenBank accession numbers for all sequences used in this study.
Download Supplemental file 1 GenBank accession numbers.xlsx (56.61 Kb)
Details View File Details

When using this data, please cite the original publication:

Mays HL, McKay BD, Tietze DT, Yao C, Miller LN, Moreland KN, Lei F (2015) A multilocus molecular phylogeny for the avian genus Liocichla (Passeriformes: Leiothrichidae: Liocichla). Avian Research 6:17. http://dx.doi.org/10.1186/s40657-015-0025-y

Additionally, please cite the Dryad data package:

Mays HL, McKay BD, Tietze DT, Yao C, Miller LN, Moreland KN, Lei F (2015) Data from: A multilocus molecular phylogeny for the avian genus Liocichla (Passeriformes: Leiothrichidae: Liocichla). Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.413f4
Cite | Share
Download the data package citation in the following formats:
   RIS (compatible with EndNote, Reference Manager, ProCite, RefWorks)
   BibTex (compatible with BibDesk, LaTeX)

Search for data

Be part of Dryad

We encourage organizations to: