Data from: Trans-Pacific RAD-Seq population genomics confirms introgressive hybridization in Eastern Pacific Pocillopora corals.

Combosch DJ, Vollmer SV

Date Published: April 9, 2015

DOI: http://dx.doi.org/10.5061/dryad.436h0

 

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Title P8-loci alignment
Downloaded 18 times
Description Loci that were found in all 8 samples were assembled in the more conservative ‘P8’ dataset, which was used to calculate pairwise population genetic metrics (e.g. heterozygosity, private alleles, pairwise distances) and to verify and support P2 results.
Download P8-loci.phy (2.545 Mb)
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Title P2-loci alignment
Downloaded 14 times
Description All loci that were recovered from at least two samples were compiled in the extensive ‘P2’ dataset, which was used for all analyses, unless stated otherwise.
Download P2-loci.phy (14.88 Mb)
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Title PdamT1P_Pst1
Downloaded 10 times
Description Pocillopora damicornis - Type 1 - Panama - Digested with Pst1, single-end RADSeq.
Download PdamT1P_Pst1.fq.zip (410.1 Mb)
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Title PdamT3P1GC_Pst1
Downloaded 6 times
Description Pocillopora damicornis - Type 3 - Panama, Gulf of Chiriquí - Digested with Pst1, single-end RADSeq
Download PdamT3P1GC_Pst1.fq.zip (880.2 Mb)
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Title PdamT3P2GP_Pst1.fq
Downloaded 8 times
Description Pocillopora damicornis - Type 3 - Panama, Gulf of Panama - Digested with Pst1, single-end RADSeq
Download PdamT3P2GP_Pst1.fq.zip (271.4 Mb)
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Title PdamT5JA_Pst1.fq
Downloaded 9 times
Description Pocillopora damicornis - Type 5 - Japan - Digested with Pst1, single-end RADSeq
Download PdamT5JA_Pst1.fq.zip (143.9 Mb)
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Title PdamT13P_Pst1.fq
Downloaded 3 times
Description Pocillopora damicornis - Type 1/3 Het - Panama - Digested with Pst1, single-end RADSeq
Download PdamT13P_Pst1.fq.zip (1.144 Gb)
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Title PdamT5TU_Pst1.fq
Downloaded 8 times
Description Pocillopora damicornis - Type 5 - French Polynesia, Tuamotus - Digested with Pst1, single-end RADSeq
Download PdamT5TU_Pst1.fq.zip (415.0 Mb)
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Title PeleT1P_Pst1.fq
Downloaded 6 times
Description Pocillopora elegans - Type 1 - Panama - Digested with Pst1, single-end RADSeq
Download PeleT1P_Pst1.fq.zip (152.5 Mb)
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Title PeydT1P_Pst1.fq
Downloaded 7 times
Description Pocillopora eydouxi - Type 1 - Panama - Digested with Pst1, single-end RADSeq
Download PeydT1P_Pst1.fq.zip (828.1 Mb)
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When using this data, please cite the original publication:

Combosch DJ, Vollmer SV (2015) Trans-Pacific RAD-Seq population genomics confirms introgressive hybridization in Eastern Pacific Pocillopora corals. Molecular Phylogenetics and Evolution 88: 154-162. http://dx.doi.org/10.1016/j.ympev.2015.03.022

Additionally, please cite the Dryad data package:

Combosch DJ, Vollmer SV (2015) Data from: Trans-Pacific RAD-Seq population genomics confirms introgressive hybridization in Eastern Pacific Pocillopora corals. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.436h0
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